Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq90 95.1 1e-14 seq32 86.0 5e-12 >seq90 Length=207308 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 ||||||||| ||||||||||||| || || || ||||||| || |||||||| | Sbjct 159098 CTCCTTTTGGATGTTGTAATCAG-AAAGAGTACGACCGTCCTCAAGTTGCTTACCAGCAA 159156 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || ||||| || ||||| || | | |||||||| || || ||||| | Sbjct 159157 AGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACAT 159216 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| |||| |||||| ||||| || ||||| |||||||| || || || | Sbjct 159217 TGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGA 159276 Query 48714 CAAAAATCTGCATCGT 48729 | ||||| |||||||| Sbjct 159277 CGAAAATTTGCATCGT 159292 >seq32 Length=396137 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || || || ||| || ||||| ||||||||||||| || || || |||| || Sbjct 381681 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAG-AAAGAGTACGACCGTCTTC 381739 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||| |||||||| || |||| |||||||| || || || | || ||||||||| Sbjct 381740 CAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTG 381799 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||||| | | || ||||| || | |||||| ||| | || ||||| Sbjct 381800 AATCTTGGTCTTGACGTTGTCG--ATGGTGTCAGAAGACTCGACCTCAAGAGTGATGGTC 381857 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || || || || ||||| Sbjct 381858 TTACCAGTAAGGGTCTTTACGAAGATTTGCAT 381889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250347756166