Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq90 95.1 1e-14
seq32 86.0 5e-12
>seq90
Length=207308
Score = 95.1 bits (104), Expect = 1e-14
Identities = 140/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593
||||||||| ||||||||||||| || || || ||||||| || |||||||| |
Sbjct 159098 CTCCTTTTGGATGTTGTAATCAG-AAAGAGTACGACCGTCCTCAAGTTGCTTACCAGCAA 159156
Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653
| || ||||| || ||||| || | | |||||||| || || ||||| |
Sbjct 159157 AGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACAT 159216
Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713
| ||||| |||| |||||| ||||| || ||||| |||||||| || || || |
Sbjct 159217 TGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGA 159276
Query 48714 CAAAAATCTGCATCGT 48729
| ||||| ||||||||
Sbjct 159277 CGAAAATTTGCATCGT 159292
>seq32
Length=396137
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576
|| || || || ||| || ||||| ||||||||||||| || || || |||| ||
Sbjct 381681 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAG-AAAGAGTACGACCGTCTTC 381739
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||| |||||||| || |||| |||||||| || || || | || |||||||||
Sbjct 381740 CAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTG 381799
Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
||| || ||||| | | || ||||| || | |||||| ||| | || |||||
Sbjct 381800 AATCTTGGTCTTGACGTTGTCG--ATGGTGTCAGAAGACTCGACCTCAAGAGTGATGGTC 381857
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| || || || || || || || |||||
Sbjct 381858 TTACCAGTAAGGGTCTTTACGAAGATTTGCAT 381889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421250347756166
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |