Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq87 91.5 2e-13 >seq87 Length=222757 Score = 91.5 bits (100), Expect = 2e-13 Identities = 263/401 (66%), Gaps = 18/401 (4%) Strand=Plus/Plus Query 6847 TGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAG-CTTGAGCAAT 6905 ||||||||||| | ||||| || || || || | || || ||| ||||||| || Sbjct 40482 TGAGCATCTCCCATTGTATGGATGAAATCGCCACACTCTAT-TCCACATACTTGAGCGAT 40540 Query 6906 TAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGC 6965 | | ||||| || || || ||||| | ||| || || ||||| || ||||| || Sbjct 40541 CATCTTTGTTAGCAACGCGTAGGAAGCGATATTGAAGGGGACACCCAAGCCCATGTCACA 40600 Query 6966 TGATCTTTGATAACATTGACAAGATAAAATATTGTCTA-------------TAGCATAAA 7012 |||||| || ||| || || | | || ||| || |||||| Sbjct 40601 ACTTCTTTGGTACAGTTGGCAGGAGAGC-TCTTTTCTGCCATTACGAAAGCTAACATAAA 40659 Query 7013 ATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAG 7072 | ||| | ||||||||||| || |||| | | | || ||||| | || ||||| | Sbjct 40660 ACTGAGAGAATACATGACAGGGTGGTAGAGCCATATCATTCATATCGGCAGGGTTCCATG 40719 Query 7073 CAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTG-T 7131 | | ||| | ||| | || ||||| |||| | ||| | |||| || | || || Sbjct 40720 CCGACATGATAATCCTTCGATCATATGGAGTCTCTTTGATTTTTCGAATCA-CATCTGCC 40778 Query 7132 AATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAA 7191 | ||||| | |||| || ||||| |||| ||| | | ||| || || |||||| Sbjct 40779 AGCTGATCCACTCCCTTTCCAGTATAATCTGTATCACAGTCTTCATATTTGGCACCAAAA 40838 Query 7192 TGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTC 7232 || | ||||||||| ||||| | ||| |||| ||| ||||| Sbjct 40839 TGACGCCATTGAAATCCATAGACAGGTCCTAGATCTCCTTC 40879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595870763565600