Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq79 122 7e-23
seq111 96.9 3e-15
seq32 93.3 4e-14
>seq79
Length=299291
Score = 122 bits (134), Expect = 7e-23
Identities = 400/613 (65%), Gaps = 9/613 (1%)
Strand=Plus/Minus
Query 133023 CAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACACATCAATGACC 133082
||||||| || |||||| |||| |||||| |||||||| | ||| |||||||| | ||
Sbjct 118773 CAAATTCGTCTCCATAGACCTCGTCCAAACCAGGACACTCATTAGGGCACATCAAAGTCC 118714
Query 133083 ATTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCCACATGGCAAAAAATA 133142
| | || || | || || ||||||||||| || |||| | ||| || || |
Sbjct 118713 AATCCTCGTTAGCCTTGACTCTCTTCATGAACAAGTCGGGGATCCAAAGGGCCAAGAACA 118654
Query 133143 AATCGCGAGCCTTCATATCTTCCGCGCCCATATTTCGTT-TCAAGTCCaaaaaagtaaaa 133201
|||| | || | |||||| || | ||| || |||||| | || ||||
Sbjct 118653 AATCTCTGGCACGGACTTCTTCC-TTACCGTGGTTCTTTCGCAAGTCGATGAATTCAAAA 118595
Query 133202 aTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCC---TTTCCTTTTACCTCCC 133258
| || | ||||||||||| | || | ||| ||||| || | || | ||||| ||
Sbjct 118594 ACATCGTCGTGCCAAGGCTCCAAGTACATGGCGAAAGCACCTGGTCTCTTGTTACCACCT 118535
Query 133259 TGATCCACATGTCTAAGCA-TGCTGTTGAAGACACGCAATGCAGGACCCAATCCTGCGGC 133317
|| || |||| ||| |||| || ||||||| || | ||| ||| | | || |
Sbjct 118534 TGGTCAACATATCT-AGCAGTGTTGTTGAAAACTCTCAACATAGGGACAATACCGTTAGA 118476
Query 133318 AGTACCGTTGGTGGATTTGATTTTACTGTTAGCGGCACGAAT-TTGAGAAACGTTAAGGC 133376
||||||||| || || | || |||||| || ||| | | | || |
Sbjct 118475 AGTACCGTTAGTACCGGCAATATAGGAACCAGTGGCACGGATATTGTGGATACTCAA-AC 118417
Query 133377 CTATACCGCCTCCGTGTTTAGATATCATGGCACAATCGTTGAGAGTTTTATAGATGCCAT 133436
| ||||| ||| | || || |||| |||||| || | ||| | |||||| || |
Sbjct 118416 CAATACCACCTGCAGACTTCGAGATCAAGGCACAGGTCTTCAAAGTATCATAGATACCCT 118357
Query 133437 TGATGCTGTCTTCCTGGATGTTGAGCAAATAACACGACGACATCTGAGGCATTTTCATGC 133496
||| ||| |||| ||||| | ||| |||| |||||||| || ||| | | |
Sbjct 118356 CAATGGAGTCATCCTTCATGTTTACCAAGAAACAAGACGACATTTGTGGCTTGGGAGTAC 118297
Query 133497 CAGAAGAAAACAAAGTGGGACTAGCGTGAGTAAACAGCTTTGATCGCATCAATCTGTAGG 133556
||| | ||||||| ||| ||| |||||||| |||| | ||| | |||| |
Sbjct 118296 CAGCATTGTACAAAGTAGGAGAAGCATGAGTAAAGTACTTTTGTGACATGTAATTGTAAG 118237
Query 133557 ACTCAATTGCGCTTTCAATGTCTTCACCATGAATTTGTAGCGCTACACGCATCAGCATAT 133616
||||| || | ||||||| | ||||| || | ||||| | ||| | |||||
Sbjct 118236 TTTCAATGGCCTTGGCAATGTCCGCGCCATGGATACCAACAGCTACTCTCATGATCATAT 118177
Query 133617 GTTGAGGTCGCTC 133629
||||||||| |||
Sbjct 118176 GTTGAGGTCTCTC 118164
>seq111
Length=751517
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074
||||| || | || ||| |||| |||||| | ||||||||| || | |||||
Sbjct 299054 ACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCATTGACAATGTCAAGACC 299113
Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134
||||| ||||| ||||| || || || |||||||| | || || | || || |||
Sbjct 299114 AAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAACAACGTCTTATCTTCGCTGGTAAG 299173
Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194
||||||||||||| ||||| | | || || ||||| ||||| || ||||| ||||
Sbjct 299174 CAACTCGAAGATGGCAGAACCCTTTCTGACTACAACATCCAAAAGGAGTCTACTCTTCAC 299233
Query 24195 TTAGTGTTAAGATTGAGAGGAGG 24217
| || | | |||||||| ||
Sbjct 299234 CTTGTCCTCCGTTTGAGAGGTGG 299256
>seq32
Length=396137
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
|| ||||||| | || ||||| || | ||||| || | || || | || |||||| |
Sbjct 381893 CATAATGCAAATCTTCGTAAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTCGAGTC 381834
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
||||||||||| | ||||| |||||| ||||| ||||| || ||||| ||
Sbjct 381833 TTCTGACACCATCGACAACGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGA 381774
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166
|||||| | |||||| || || |||||||| ||||| | | | | |||||
Sbjct 381773 CCAACAGCGTTTGATTTTCGCTGGTAAGCAACTGGAAGACGGTCGTACTCTTTCTGATTA 381714
Query 24167 TAACATTCAAAAAGAATCTAC 24187
||||| ||||||||||| ||
Sbjct 381713 CAACATCCAAAAAGAATCCAC 381693
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || || || | ||||| || | || ||| | || |||||| | |
Sbjct 380977 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAGTCTTCC 380918
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | || || ||||| ||||| || ||||| || || || |||
Sbjct 380917 GACACCATCGACAACGTTAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 380858
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | |||||| || || |||||||| || |||| |||| | | ||| || |||
Sbjct 380857 CAGCGTTTGATTTTCGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTTCCGACTACAAC 380798
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|| ||||| || || || | || |||||
Sbjct 380797 ATCCAAAAGGAGTCCACTCTCCACTTAGT 380769
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || || || || ||||| || | || || ||||||| || | |
Sbjct 381205 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAAGTTGAATCTTCC 381146
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | || || ||||| ||||| || || || || || || |||
Sbjct 381145 GACACCATCGATAATGTTAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAA 381086
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | |||||| || || ||||||||||| |||| | | | | ||||| |||
Sbjct 381085 CAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTTTCTGATTACAAC 381026
Query 24171 ATTCAAAAAGAATCTAC 24187
|| ||||||||||| ||
Sbjct 381025 ATCCAAAAAGAATCCAC 381009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429935130185730
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |