Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq79 122 7e-23 seq111 96.9 3e-15 seq32 93.3 4e-14 >seq79 Length=299291 Score = 122 bits (134), Expect = 7e-23 Identities = 400/613 (65%), Gaps = 9/613 (1%) Strand=Plus/Minus Query 133023 CAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACACATCAATGACC 133082 ||||||| || |||||| |||| |||||| |||||||| | ||| |||||||| | || Sbjct 118773 CAAATTCGTCTCCATAGACCTCGTCCAAACCAGGACACTCATTAGGGCACATCAAAGTCC 118714 Query 133083 ATTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCCACATGGCAAAAAATA 133142 | | || || | || || ||||||||||| || |||| | ||| || || | Sbjct 118713 AATCCTCGTTAGCCTTGACTCTCTTCATGAACAAGTCGGGGATCCAAAGGGCCAAGAACA 118654 Query 133143 AATCGCGAGCCTTCATATCTTCCGCGCCCATATTTCGTT-TCAAGTCCaaaaaagtaaaa 133201 |||| | || | |||||| || | ||| || |||||| | || |||| Sbjct 118653 AATCTCTGGCACGGACTTCTTCC-TTACCGTGGTTCTTTCGCAAGTCGATGAATTCAAAA 118595 Query 133202 aTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCC---TTTCCTTTTACCTCCC 133258 | || | ||||||||||| | || | ||| ||||| || | || | ||||| || Sbjct 118594 ACATCGTCGTGCCAAGGCTCCAAGTACATGGCGAAAGCACCTGGTCTCTTGTTACCACCT 118535 Query 133259 TGATCCACATGTCTAAGCA-TGCTGTTGAAGACACGCAATGCAGGACCCAATCCTGCGGC 133317 || || |||| ||| |||| || ||||||| || | ||| ||| | | || | Sbjct 118534 TGGTCAACATATCT-AGCAGTGTTGTTGAAAACTCTCAACATAGGGACAATACCGTTAGA 118476 Query 133318 AGTACCGTTGGTGGATTTGATTTTACTGTTAGCGGCACGAAT-TTGAGAAACGTTAAGGC 133376 ||||||||| || || | || |||||| || ||| | | | || | Sbjct 118475 AGTACCGTTAGTACCGGCAATATAGGAACCAGTGGCACGGATATTGTGGATACTCAA-AC 118417 Query 133377 CTATACCGCCTCCGTGTTTAGATATCATGGCACAATCGTTGAGAGTTTTATAGATGCCAT 133436 | ||||| ||| | || || |||| |||||| || | ||| | |||||| || | Sbjct 118416 CAATACCACCTGCAGACTTCGAGATCAAGGCACAGGTCTTCAAAGTATCATAGATACCCT 118357 Query 133437 TGATGCTGTCTTCCTGGATGTTGAGCAAATAACACGACGACATCTGAGGCATTTTCATGC 133496 ||| ||| |||| ||||| | ||| |||| |||||||| || ||| | | | Sbjct 118356 CAATGGAGTCATCCTTCATGTTTACCAAGAAACAAGACGACATTTGTGGCTTGGGAGTAC 118297 Query 133497 CAGAAGAAAACAAAGTGGGACTAGCGTGAGTAAACAGCTTTGATCGCATCAATCTGTAGG 133556 ||| | ||||||| ||| ||| |||||||| |||| | ||| | |||| | Sbjct 118296 CAGCATTGTACAAAGTAGGAGAAGCATGAGTAAAGTACTTTTGTGACATGTAATTGTAAG 118237 Query 133557 ACTCAATTGCGCTTTCAATGTCTTCACCATGAATTTGTAGCGCTACACGCATCAGCATAT 133616 ||||| || | ||||||| | ||||| || | ||||| | ||| | ||||| Sbjct 118236 TTTCAATGGCCTTGGCAATGTCCGCGCCATGGATACCAACAGCTACTCTCATGATCATAT 118177 Query 133617 GTTGAGGTCGCTC 133629 ||||||||| ||| Sbjct 118176 GTTGAGGTCTCTC 118164 >seq111 Length=751517 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| || | || ||| |||| |||||| | ||||||||| || | ||||| Sbjct 299054 ACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCATTGACAATGTCAAGACC 299113 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 ||||| ||||| ||||| || || || |||||||| | || || | || || ||| Sbjct 299114 AAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAACAACGTCTTATCTTCGCTGGTAAG 299173 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||||||||||||| ||||| | | || || ||||| ||||| || ||||| |||| Sbjct 299174 CAACTCGAAGATGGCAGAACCCTTTCTGACTACAACATCCAAAAGGAGTCTACTCTTCAC 299233 Query 24195 TTAGTGTTAAGATTGAGAGGAGG 24217 | || | | |||||||| || Sbjct 299234 CTTGTCCTCCGTTTGAGAGGTGG 299256 >seq32 Length=396137 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || ||||||| | || ||||| || | ||||| || | || || | || |||||| | Sbjct 381893 CATAATGCAAATCTTCGTAAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTCGAGTC 381834 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||||||||||| | ||||| |||||| ||||| ||||| || ||||| || Sbjct 381833 TTCTGACACCATCGACAACGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGA 381774 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||| | |||||| || || |||||||| ||||| | | | | ||||| Sbjct 381773 CCAACAGCGTTTGATTTTCGCTGGTAAGCAACTGGAAGACGGTCGTACTCTTTCTGATTA 381714 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| ||||||||||| || Sbjct 381713 CAACATCCAAAAAGAATCCAC 381693 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||| || | || ||| | || |||||| | | Sbjct 380977 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAGTCTTCC 380918 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||| || ||||| || || || ||| Sbjct 380917 GACACCATCGACAACGTTAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 380858 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||||| || || |||||||| || |||| |||| | | ||| || ||| Sbjct 380857 CAGCGTTTGATTTTCGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTTCCGACTACAAC 380798 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| || || || | || ||||| Sbjct 380797 ATCCAAAAGGAGTCCACTCTCCACTTAGT 380769 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || ||||| || | || || ||||||| || | | Sbjct 381205 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAAGTTGAATCTTCC 381146 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||| || || || || || || ||| Sbjct 381145 GACACCATCGATAATGTTAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAA 381086 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||||| || || ||||||||||| |||| | | | | ||||| ||| Sbjct 381085 CAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTTTCTGATTACAAC 381026 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||||||||| || Sbjct 381025 ATCCAAAAAGAATCCAC 381009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935130185730