Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq90 107 2e-18 seq32 107 2e-18 seq111 96.9 3e-15 seq79 93.3 4e-14 >seq90 Length=207308 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || ||||||||||| ||||||||||| Sbjct 159063 CCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGAA 159122 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| || ||||| || || |||| ||||| || || || || || Sbjct 159123 AGAGTACGACCGTCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGA 159182 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 159183 ATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGACTCAACC 159242 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| |||||||| || || || |||||||| ||||| Sbjct 159243 TCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCAT 159289 >seq32 Length=396137 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || ||||| || | || ||||||||||| |||||||| ||| Sbjct 380751 CCACCACGCAGACGAAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 380810 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | ||||| || ||||| || ||| | || |||||||| ||||| || || Sbjct 380811 AGGGTTCTTCCATCCTCAAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGA 380870 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | || |||| ||||||| Sbjct 380871 ATGCCCTCCTTGTCTTGGATCTTGGTCTTAACGTTGTCGATGGTGTCGGAAGACTCGACC 380930 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| ||||| || || || || ||||| || ||||| Sbjct 380931 TCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 380977 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || || || ||||| ||||||||||| Sbjct 381663 CCACCACGGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAA 381722 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || || ||||| || ||| | || |||||||| ||||| ||||| Sbjct 381723 AGAGTACGACCGTCTTCCAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGA 381782 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||| | || | || || | ||||||| Sbjct 381783 ATACCTTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCGACC 381842 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| ||||| || || || |||||||| || ||||| Sbjct 381843 TCAAGAGTGATGGTCTTACCAGTAAGGGTCTTTACGAAGATTTGCAT 381889 >seq111 Length=751517 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | |||||| || || | || | || ||||||||||| |||||||| || Sbjct 299256 CCACCTCTCAAACGGAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 299197 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | || | || || || ||||| || ||| |||| | ||| || || || || || Sbjct 299196 AGGGTTCTGCCA-TCTTCGAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGGGG 299138 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| ||||| ||| || ||||| | || | || |||| ||||||| Sbjct 299137 AATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCGGAAGACTCGAC 299078 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 |||| ||| | ||| ||||| || || || || |||||| Sbjct 299077 CTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAAA 299038 >seq79 Length=299291 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 || ||||| | ||| ||||| || || | || | ||| | || | ||| || ||| | Sbjct 119596 TGGTTGACAATCTGGAACTCTCCAGCAAGGACTCTACGAGAGTAGATGTTGGATGTGTAA 119537 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 || |||||| | || || || || |||||||| | ||||| || || ||||| || Sbjct 119536 GGCTCAAAACATTCATTGTTACCGAGGATTTGGGAGGTCGAAGCAGTAGGCATAGGAGCA 119477 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 || | | || || | || |||||||| || | | ||| || ||| |||||||| Sbjct 119476 ACGAGAAGAGAGTTTCTAAGACCGTGCTTAGCCATCTTCTTCTTAAGAGTAGCCCAATCC 119417 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCT 145283 ||||| ||| || | || |||||||||||||| || |||| |||| Sbjct 119416 CATAGATCAGTGGGAGTAACATCCCACATGTCGTATTGTAAAAGACCCT 119368 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 145631 GACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCA 145689 || ||||| |||||||| ||| || || || | | ||| | || || || ||| Sbjct 119014 GAAGCCAAGTTACAAACAGCCACTTCTTCAGGAGAAGA-GTACTCGACAATTTCACAGCA 118956 Query 145690 CAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTC 145749 ||| ||| | ||||||| || ||||| ||||| |||||||| || ||||| || || || Sbjct 118955 CAAGTTGGAAGATTTGATAGTACCCAGGTTTTGTTGATTACTCTTGCTGTTACAAGCATC 118896 Query 145750 CTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779 ||||||||||||| | || |||||||| Sbjct 118895 CTTGTAGAGCATGAAGGGGTTACCAGTCTC 118866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011820573440