Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq90 107 2e-18
seq32 107 2e-18
seq111 96.9 3e-15
seq79 93.3 4e-14
>seq90
Length=207308
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || || | || | || ||||||||||| |||||||||||
Sbjct 159063 CCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGAA 159122
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || |||||| || ||||| || || |||| ||||| || || || || ||
Sbjct 159123 AGAGTACGACCGTCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGA 159182
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
||||| || ||||| ||| || ||||| | || | || |||| ||||| |
Sbjct 159183 ATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGACTCAACC 159242
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||| | ||| |||||||| || || || |||||||| |||||
Sbjct 159243 TCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCAT 159289
>seq32
Length=396137
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||| || ||||| || | || ||||||||||| |||||||| |||
Sbjct 380751 CCACCACGCAGACGAAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 380810
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| | ||||| || ||||| || ||| | || |||||||| ||||| || ||
Sbjct 380811 AGGGTTCTTCCATCCTCAAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGA 380870
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||| | | || | || |||| |||||||
Sbjct 380871 ATGCCCTCCTTGTCTTGGATCTTGGTCTTAACGTTGTCGATGGTGTCGGAAGACTCGACC 380930
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| ||||| || || || || ||||| || |||||
Sbjct 380931 TCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 380977
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || || || || | || || || ||||| |||||||||||
Sbjct 381663 CCACCACGGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAA 381722
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || ||| || || ||||| || ||| | || |||||||| ||||| |||||
Sbjct 381723 AGAGTACGACCGTCTTCCAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGA 381782
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| ||||| || || ||||| | || | || || | |||||||
Sbjct 381783 ATACCTTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCGACC 381842
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||| ||||| || || || |||||||| || |||||
Sbjct 381843 TCAAGAGTGATGGTCTTACCAGTAAGGGTCTTTACGAAGATTTGCAT 381889
>seq111
Length=751517
Score = 96.9 bits (106), Expect = 3e-15
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| | |||||| || || | || | || ||||||||||| |||||||| ||
Sbjct 299256 CCACCTCTCAAACGGAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 299197
Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| ||| | || | || || || ||||| || ||| |||| | ||| || || || || ||
Sbjct 299196 AGGGTTCTGCCA-TCTTCGAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGGGG 299138
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|||||||| ||||| ||| || ||||| | || | || |||| |||||||
Sbjct 299137 AATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCGGAAGACTCGAC 299078
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226
|||| ||| | ||| ||||| || || || || ||||||
Sbjct 299077 CTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAAA 299038
>seq79
Length=299291
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114
|| ||||| | ||| ||||| || || | || | ||| | || | ||| || ||| |
Sbjct 119596 TGGTTGACAATCTGGAACTCTCCAGCAAGGACTCTACGAGAGTAGATGTTGGATGTGTAA 119537
Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174
|| |||||| | || || || || |||||||| | ||||| || || ||||| ||
Sbjct 119536 GGCTCAAAACATTCATTGTTACCGAGGATTTGGGAGGTCGAAGCAGTAGGCATAGGAGCA 119477
Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234
|| | | || || | || |||||||| || | | ||| || ||| ||||||||
Sbjct 119476 ACGAGAAGAGAGTTTCTAAGACCGTGCTTAGCCATCTTCTTCTTAAGAGTAGCCCAATCC 119417
Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCT 145283
||||| ||| || | || |||||||||||||| || |||| ||||
Sbjct 119416 CATAGATCAGTGGGAGTAACATCCCACATGTCGTATTGTAAAAGACCCT 119368
Score = 84.2 bits (92), Expect = 2e-11
Identities = 110/150 (73%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 145631 GACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCA 145689
|| ||||| |||||||| ||| || || || | | ||| | || || || |||
Sbjct 119014 GAAGCCAAGTTACAAACAGCCACTTCTTCAGGAGAAGA-GTACTCGACAATTTCACAGCA 118956
Query 145690 CAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTC 145749
||| ||| | ||||||| || ||||| ||||| |||||||| || ||||| || || ||
Sbjct 118955 CAAGTTGGAAGATTTGATAGTACCCAGGTTTTGTTGATTACTCTTGCTGTTACAAGCATC 118896
Query 145750 CTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779
||||||||||||| | || ||||||||
Sbjct 118895 CTTGTAGAGCATGAAGGGGTTACCAGTCTC 118866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472011820573440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |