Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq78 253 2e-62 >seq78 Length=1347436 Score = 253 bits (280), Expect = 2e-62 Identities = 533/784 (68%), Gaps = 17/784 (2%) Strand=Plus/Plus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 ||||||||| ||||| ||||| || ||||| ||| |||| | | | ||||||||| || Sbjct 284372 CAATAATCTGTCAGCGACAAACTCAATGTATTGACACATGAGCTTAGCATTCATTCCAAG 284431 Query 92977 AAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 ||||| |||| || | || || |||||||| || || || || | || ||||| | | Sbjct 284432 AAGAC-TACATGGCAAGGCATCAGTCAAGAATTCCTTTTCAATACCGACAGCTTCAGTAA 284490 Query 93036 AGATTTCTATTACTCTACT-ATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094 || || || | || | || | | | | | |||| | || || ||||| Sbjct 284491 TAAT--CTTTTCAACAACAGACTTCTTAGGTCTGTT--GACA-AGGTGGCCAAAAAGCAA 284545 Query 93095 GCAA----AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| | || || || | ||||| || || || ||||||||||| ||| || || Sbjct 284546 ACAAGCGAAATCAGTGTGCATGCCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAA 284605 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| || | || || || ||||| | |||||| || |||||| |||||| || || Sbjct 284606 ACCAGGCATAAGACCACGCTTCTTCAACCAAAAGATACTAGCAAATGAACCAGAGAAGAA 284665 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 ||||| || || || || || || || | ||| || ||||| | | || | Sbjct 284666 GATACCCTCGACAGCAGCGAAAGCAACGAGACGCTCAGCAAAGGTAGATTGATCATCAGA 284725 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT-TCGATAGCGT 93329 |||||| ||| ||||| || || || |||||||||||||| | |||| || ||||| | Sbjct 284726 GATCCAAGTTAGGGCCCAGTCAGCCTTCTTCTTAATACAAGGAA-TGTTATCAATAGCAT 284784 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 || | | | | ||| | | ||| || || ||||| || | | || || Sbjct 284785 GGAACAAGAAGTTAGCCTCCTTAGCATCCTTGATATAAGTATCAATAAGTAAGGAGTAAG 284844 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 | |||| ||||| ||||||||| |||||||||||||||||||| | || || | | Sbjct 284845 TCTCAGCATGGATATTCTCCATCATGATTTGGAATCCGTAGAAACACTTGGCCTCAGGAA 284904 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 |||| || || ||| |||||||| || || || |||||||| ||||||||||| || | Sbjct 284905 TCTGGACCTCACCAGAGAATCTCTCAACAAGGTTCTCATTGACAATACCATCGGAGGCAG 284964 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCC 93566 |||| ||||| | | | | ||||| | |||||||||| |||| | | |||| Sbjct 284965 CAAAGAAAGCGAGCACACGAGAGATAAAGAATCTCTCATCATCATTAAGACGGTGTTCCC 285024 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 | || | ||| ||| |||||| | ||||| ||||||| || || || || |||| Sbjct 285025 AGTCACTAATATCCTTTCCAAGATCAATCTCTTCAGCAGTCCAGAAAGAGGCCTCAGCTT 285084 Query 93627 TTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGT 93686 |||||||| | ||| || || || || | || || || | |||||| | ||||||| Sbjct 285085 GCTTGTACATTTGCCAGATCTCATGGTACTTGATAGGGAACAAGACAAATCTGTTAGGGT 285144 Query 93687 TATC 93690 | || Sbjct 285145 TCTC 285148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859644513840