Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq32 131 1e-25 seq90 122 7e-23 seq111 93.3 4e-14 >seq32 Length=396137 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || ||||| || ||||||| ||||| ||| | || Sbjct 381205 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAAGTTGAATCTTCC 381146 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || |||||||||||||||||||| || || ||| Sbjct 381145 GACACCATCGATAATGTTAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAA 381086 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || || | |||||| ||| || | || ||||||||| Sbjct 381085 CAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTTTCTGATTACAAC 381026 Query 22399 ATTCAAAAAGAATCCAC 22415 || |||||||||||||| Sbjct 381025 ATCCAAAAAGAATCCAC 381009 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | ||||| || || |||| || || || || | | Sbjct 380749 ATGCAAATCTTTGTCAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCT 380690 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || |||||||||||||| ||||| || || ||| Sbjct 380689 GACACCATCGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 380630 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || || || || ||||| || || | | ||| |||| || |||||| Sbjct 380629 CAACGTCTTATCTTCGCTGGTAAGCAGTTGGAAGACGGCAGAACCCTCTCTGACTACAAC 380570 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || |||||| | || || || Sbjct 380569 ATCCAGAAGGAGTCCACCCTCCACTTGGT 380541 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || || | || ||||| || ||| | | Sbjct 381661 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTCGAATCTTCT 381602 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || |||| || || |||||||||||||||||||| || || ||| Sbjct 381601 GATACTATTGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAA 381542 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||| ||||| || | |||||| ||| || |||| || |||||| Sbjct 381541 CAAAGACTCATCTTTGCTGGCAAGCAACTCGAGGATGGCCGTACTCTCTCTGACTACAAC 381482 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| || || || Sbjct 381481 ATCCAAAAGGAGTCTAC 381465 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | || ||||| || ||||||| ||||| || | | Sbjct 381433 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAGACTATCACTCTCGAAGTAGAGTCTTCT 381374 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || ||||| || |||||||||||||| || || ||| Sbjct 381373 GACACCATCGATAATGTTAAGACCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAA 381314 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| ||||| || || || | |||||| | | || | || || |||||| Sbjct 381313 CAAAGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGCAGAACTCTTTCTGACTACAAC 381254 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 381253 ATTCAAAAGGAGTCTAC 381237 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || ||||| || |||||||||| || || | | Sbjct 381889 ATGCAAATCTTCGTAAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTCGAGTCTTCT 381830 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || |||||||||||||| |||||||| || || ||| Sbjct 381829 GACACCATCGACAACGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 381770 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || || | || || || || | || ||||||||| Sbjct 381769 CAGCGTTTGATTTTCGCTGGTAAGCAACTGGAAGACGGTCGTACTCTTTCTGATTACAAC 381710 Query 22399 ATTCAAAAAGAATCCAC 22415 || |||||||||||||| Sbjct 381709 ATCCAAAAAGAATCCAC 381693 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || ||||| || |||| ||||| || || | || Sbjct 380977 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAGTCTTCC 380918 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || |||||||||||||| ||||| || || ||| Sbjct 380917 GACACCATCGACAACGTTAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 380858 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || || | |||||| | ||| | ||||| |||||| Sbjct 380857 CAGCGTTTGATTTTCGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTTCCGACTACAAC 380798 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || ||||| | || ||||| | || |||| || ||| Sbjct 380797 ATCCAAAAGGAGTCCACTCTCCACTTAGTCCTTCGTCTGCGTGGTGGT 380750 >seq90 Length=207308 Score = 122 bits (134), Expect = 7e-23 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 ||| |||||||||||| || || || | |||||||| || |||| || || || || Sbjct 159294 TAACGATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGAGGTTGAGT 159235 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | |||| ||| | ||| || |||| || || |||||||||||||| ||||| || | Sbjct 159234 CTTCCGACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAG 159175 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 ||||||||||| | || ||||| || || || | ||||| || || | || |||| Sbjct 159174 ATCAACAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACTCTTTCTGATT 159115 Query 22394 ACAACATTCAAAAAGAATCCAC 22415 ||||||| ||||| || || || Sbjct 159114 ACAACATCCAAAAGGAGTCTAC 159093 >seq111 Length=751517 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || ||||| || |||| || || || || | |||| ||| | Sbjct 299038 TTTCGTCAAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCAT 299097 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || |||||||| || ||||| || |||||||||||||| Sbjct 299098 TGACAATGTCAAGACCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAACAACGTCT 299157 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||| || || || || || | || ||| | | ||| | || || |||||||| ||||| Sbjct 299158 TATCTTCGCTGGTAAGCAACTCGAAGATGGCAGAACCCTTTCTGACTACAACATCCAAAA 299217 Query 22407 AGAATCCAC 22415 || || || Sbjct 299218 GGAGTCTAC 299226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727150837790