Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq89 149 1e-30 seq120 95.1 2e-14 seq78 91.5 3e-13 >seq89 Length=907189 Score = 149 bits (164), Expect = 1e-30 Identities = 668/1039 (64%), Gaps = 36/1039 (3%) Strand=Plus/Minus Query 279331 AGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGA 279390 ||||| ||| ||||||||| ||||| ||||||| ||||| || || ||||||| | Sbjct 537551 AGGAGGATGATGAAGGTGAGGACTTGTGTAACTGTGAGTTCTCTCTTGCTTATGGTGCCA 537492 Query 279391 AGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCG 279450 |||| |||| ||| ||||| ||| | ||||||| | ||| ||||||||| | Sbjct 537491 AGATCTTGCTTAACCGTACCCAACTCCGTCTTAAGCGTGCCCGCCGATATGGTCTCTGTG 537432 Query 279451 GTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAG 279510 |||| || || || |||||| ||||| ||| | || ||||| |||||||| | || | Sbjct 537431 GTCCTAACGGTGCTGGTAAGTCTACTCTTATGAGAGCTATTGCCAACGGTCAAGTCGAGG 537372 Query 279511 GATTTCCTAACGCATCTG--AGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTC 279568 | ||||| || || | ||||| || || || || |||||||| ||||| | Sbjct 537371 G-TTTCCCCACTCAAGAAGAATGTAAG-ACCGTCTACGTCGAGCACGATATCGATGGTAC 537314 Query 279569 TCTCTCGGATAGCACTGTGTTCGACTTCCTAACGTCTGACAAT-CAGGTTATGGAAATCA 279627 || | | |||| || || | |||| | | | || | || | | ||| | |||||| Sbjct 537313 TCACGCTGATACCAACGTTGTTGACTACGTTA--TC-GCCACTGCCGGTGA-GGAAATTG 537258 Query 279628 GCTCTCCTGAGGAAATCATCCAGAAACTGGAGGCCAATGGTTTTGATGAAAGAATGCGTA 279687 | || ||| | | ||| ||| | ||||| | | | | ||| | Sbjct 537257 GTTCCAAGGAGACTGTTTCCAAGACTTTGGTTGAGTTCGGTTTCGTTAATGGTATGACTG 537198 Query 279688 ATCTGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCT---CACTCGCG 279744 | |||| | ||||| || |||||||||||||||||| |||| || |||| | Sbjct 537197 AAATGCCCATCACCTCTCTTTCTGGTGGTTGGAAGATGAAGTTGGCTCTTGCCACT---G 537141 Query 279745 CCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCA 279804 || |||| | || ||| || | |||||||||| || ||||| ||| |||| ||| Sbjct 537140 CCGTTCTCCGTAACGCTGATATCTTGTTGCTTGATGAACCCACCAATCACTTGGATACCG 537081 Query 279805 CCAACGTAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTG 279864 |||||| || ||| | | |||| | |||| ||| || | |||| |||||| Sbjct 537080 TCAACGTTGCTTGGTTGATCAACTACTTGACCA-CCTG--TAACATCACTTCTATCATTG 537024 Query 279865 TCTCTCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAA 279924 |||| ||||||||||| ||| | || || || |||||| ||||| ||| | Sbjct 537023 TCTCCCACGACTCTGGTTTCTTGGACAAGGTCTGTCAATACATCATCCACTACGAG--AG 536966 Query 279925 ATCTGAAGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGG 279984 || ||||| ||| ||| || ||||| |||| ||||| ||| |||| | Sbjct 536965 AT-ACAAGCTTAGAAAGTACAAGGGTAACCTTTCTGAATTCGTCAAGAAGGTTCCTGCCG 536907 Query 279985 CGGCCGCCTACTATGACCTGAAGGACGCCACCGCC---AAGTGGGAATTCCCTGAGCCAG 280041 | ||||||| || || | || | | | ||| | ||||||||||| | Sbjct 536906 CCAAGTCCTACTACGAGCT---CGGTGCTTCTGACCTTGAGTTCCAGTTCCCTGAGCCTG 536850 Query 280042 GGTTTCTGGAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCT 280101 | | ||| ||||| | | | ||| | || || | ||| || | | |||| Sbjct 536849 GTTATCTTGAGGGTGTTAAGACTAAGCAAAAGGCTATTGTCAAGGTCTCCAACATGTCCT 536790 Query 280102 TTGCTTATCCCAATGGCCCCAACATCTTCAGCAGTG---TCAACTCGCAGGTTTCTATGA 280158 | || || | | |||| | | ||| | | |||| || |||| | Sbjct 536789 TCCAATACCCTGGTACCTCCAAGCCCCAAATCAGAGACATTAACTTCCAATGTTCTCTTT 536730 Query 280159 ACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCC 280218 ||| || |||| |||||||| ||||||||||| ||||||||||| || ||||| ||| Sbjct 536729 CCTCTCGTATTGCCGTCATTGGTCCCAATGGTGCTGGTAAGTCTACTCTTATCAACGTCT 536670 Query 280219 TGACTGGCGAG---ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGA 280275 ||||||| ||| || || ||| | | | || | || ||| || | Sbjct 536669 TGACTGGTGAGCTTCTCCCTACCTCTG-GTGAT--GTCTATGTCCACGAGAACTGTCGTA 536613 Query 280276 TGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTA 280335 | |||||| | || ||||||||| |||||||| |||||||| |||| ||||||| Sbjct 536612 TCGCTTACATTAAGCAACACGCTTTCGCACACATCGATAACCACCTTGACAAGACTCCTT 536553 Query 280336 ACCAATACATTCAGTGGCG 280354 |||| || || ||||| Sbjct 536552 CTGAATATATCCAATGGCG 536534 >seq120 Length=38756 Score = 95.1 bits (104), Expect = 2e-14 Identities = 335/522 (64%), Gaps = 6/522 (1%) Strand=Plus/Plus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 ||| || || |||||||||| ||| | ||||| | ||| ||||| ||||| Sbjct 28890 TGAGTTTATTAACAAGGAGCTGATTTTGTTCTCTATGGCCGATAACATTCGTTCGATTCC 28949 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 | ||||||| | ||||| || |||||||| |||| | ||||| || Sbjct 28950 ATCTCTTATGGATGGTTTTAAGCCTGGACAACGTAAGATTCTCTACGGTTGTTTCAAACG 29009 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 ||||| || | ||||| || || || || || |||||||||||| |||| |||| Sbjct 29010 TAACCTCGTCAATGAAATCAAAGTAGCACAATTGGGTGGTTATGTATCTGAAAACACTGG 29069 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 |||||||| |||||||| || | | ||||| || |||| ||||| | ||| Sbjct 29070 ATACCATCATGGTGAGCAATCGTTGTATCAAACAATTGTTGGTTTGGCTCAGGATTTTGT 29129 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGG 218816 || || ||||| |||| | | || || ||| |||||||| ||| |||| Sbjct 29130 TGGATCCAATAACATCTACTTTTTAATGCCTAATGGTAGTTTTGGTTCCCGTGCCATGGG 29189 Query 218817 TGGAAAGGATAGTGCTTCTG---CCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCG 218873 ||||| || |||||| | | | ||||| || || || || | ||||| | Sbjct 29190 CGGAAAAGA---TGCTTCGGCACCTCGTTATATTTTCACTGAGCTGAATTCTTTGACGAG 29246 Query 218874 CCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTC 218933 || | ||| ||| |||||| || ||||| | || || |||| |||| | Sbjct 29247 AAAGATTTTCCATCCTCACGATGACCCACTATACAAGTACATGGAAGATGATGATTCTAC 29306 Query 218934 GATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGG 218993 | ||||| || ||||| | || || || | | || ||||| |||| | || Sbjct 29307 TGTGGAGCCAGAATGGTACGCACCAATCATCCCCACTGTTCTAGTAAACGGTGGTGAAGG 29366 Query 218994 TATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCC 219035 || || || || | ||||| ||||||||| |||||| || Sbjct 29367 CATTGGTACTGGTTGGAGTACAAACATTCCTTGTTACAACCC 29408 >seq78 Length=1347436 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 251526 CATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTC 251585 ||| ||||||| ||| || ||||| || | ||||||||||||| ||| || Sbjct 284243 CATGACACCTGCTTTTTGGTAGTCAGAGACTCTCTTCTCGAAGAAATTAGTCTTACCAGA 284302 Query 251586 CAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCC 251645 |||||||| ||||||||| |||||||| || || |||||||| |||| | || Sbjct 284303 GAGAGAGATGTTCTCCATGAAATCGAAGGGATTAGTAGCATTGTAGACCTTGTTGTTTCC 284362 Query 251646 AAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTT 251705 ||| | | || | | ||| || |||||||| | || || | ||| || | || || Sbjct 284363 AAGGGAAAGCAATAATCTGTCAGCGACAAACTCAATGTATTGACACATGAGCTTAGCATT 284422 Query 251706 CATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTC 251753 ||| |||| | || ||| || | || ||| | |||||||||||| Sbjct 284423 CATTCCAAGAAGACTACATGGCAAGGCATCAGTCAAGAATTCCTTTTC 284470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834613919606