Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq89 149 1e-30
seq120 95.1 2e-14
seq78 91.5 3e-13
>seq89
Length=907189
Score = 149 bits (164), Expect = 1e-30
Identities = 668/1039 (64%), Gaps = 36/1039 (3%)
Strand=Plus/Minus
Query 279331 AGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGA 279390
||||| ||| ||||||||| ||||| ||||||| ||||| || || ||||||| |
Sbjct 537551 AGGAGGATGATGAAGGTGAGGACTTGTGTAACTGTGAGTTCTCTCTTGCTTATGGTGCCA 537492
Query 279391 AGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCG 279450
|||| |||| ||| ||||| ||| | ||||||| | ||| ||||||||| |
Sbjct 537491 AGATCTTGCTTAACCGTACCCAACTCCGTCTTAAGCGTGCCCGCCGATATGGTCTCTGTG 537432
Query 279451 GTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAG 279510
|||| || || || |||||| ||||| ||| | || ||||| |||||||| | || |
Sbjct 537431 GTCCTAACGGTGCTGGTAAGTCTACTCTTATGAGAGCTATTGCCAACGGTCAAGTCGAGG 537372
Query 279511 GATTTCCTAACGCATCTG--AGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTC 279568
| ||||| || || | ||||| || || || || |||||||| ||||| |
Sbjct 537371 G-TTTCCCCACTCAAGAAGAATGTAAG-ACCGTCTACGTCGAGCACGATATCGATGGTAC 537314
Query 279569 TCTCTCGGATAGCACTGTGTTCGACTTCCTAACGTCTGACAAT-CAGGTTATGGAAATCA 279627
|| | | |||| || || | |||| | | | || | || | | ||| | ||||||
Sbjct 537313 TCACGCTGATACCAACGTTGTTGACTACGTTA--TC-GCCACTGCCGGTGA-GGAAATTG 537258
Query 279628 GCTCTCCTGAGGAAATCATCCAGAAACTGGAGGCCAATGGTTTTGATGAAAGAATGCGTA 279687
| || ||| | | ||| ||| | ||||| | | | | ||| |
Sbjct 537257 GTTCCAAGGAGACTGTTTCCAAGACTTTGGTTGAGTTCGGTTTCGTTAATGGTATGACTG 537198
Query 279688 ATCTGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCT---CACTCGCG 279744
| |||| | ||||| || |||||||||||||||||| |||| || |||| |
Sbjct 537197 AAATGCCCATCACCTCTCTTTCTGGTGGTTGGAAGATGAAGTTGGCTCTTGCCACT---G 537141
Query 279745 CCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCA 279804
|| |||| | || ||| || | |||||||||| || ||||| ||| |||| |||
Sbjct 537140 CCGTTCTCCGTAACGCTGATATCTTGTTGCTTGATGAACCCACCAATCACTTGGATACCG 537081
Query 279805 CCAACGTAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTG 279864
|||||| || ||| | | |||| | |||| ||| || | |||| ||||||
Sbjct 537080 TCAACGTTGCTTGGTTGATCAACTACTTGACCA-CCTG--TAACATCACTTCTATCATTG 537024
Query 279865 TCTCTCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAA 279924
|||| ||||||||||| ||| | || || || |||||| ||||| ||| |
Sbjct 537023 TCTCCCACGACTCTGGTTTCTTGGACAAGGTCTGTCAATACATCATCCACTACGAG--AG 536966
Query 279925 ATCTGAAGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGG 279984
|| ||||| ||| ||| || ||||| |||| ||||| ||| |||| |
Sbjct 536965 AT-ACAAGCTTAGAAAGTACAAGGGTAACCTTTCTGAATTCGTCAAGAAGGTTCCTGCCG 536907
Query 279985 CGGCCGCCTACTATGACCTGAAGGACGCCACCGCC---AAGTGGGAATTCCCTGAGCCAG 280041
| ||||||| || || | || | | | ||| | ||||||||||| |
Sbjct 536906 CCAAGTCCTACTACGAGCT---CGGTGCTTCTGACCTTGAGTTCCAGTTCCCTGAGCCTG 536850
Query 280042 GGTTTCTGGAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCT 280101
| | ||| ||||| | | | ||| | || || | ||| || | | ||||
Sbjct 536849 GTTATCTTGAGGGTGTTAAGACTAAGCAAAAGGCTATTGTCAAGGTCTCCAACATGTCCT 536790
Query 280102 TTGCTTATCCCAATGGCCCCAACATCTTCAGCAGTG---TCAACTCGCAGGTTTCTATGA 280158
| || || | | |||| | | ||| | | |||| || |||| |
Sbjct 536789 TCCAATACCCTGGTACCTCCAAGCCCCAAATCAGAGACATTAACTTCCAATGTTCTCTTT 536730
Query 280159 ACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCC 280218
||| || |||| |||||||| ||||||||||| ||||||||||| || ||||| |||
Sbjct 536729 CCTCTCGTATTGCCGTCATTGGTCCCAATGGTGCTGGTAAGTCTACTCTTATCAACGTCT 536670
Query 280219 TGACTGGCGAG---ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGA 280275
||||||| ||| || || ||| | | | || | || ||| || |
Sbjct 536669 TGACTGGTGAGCTTCTCCCTACCTCTG-GTGAT--GTCTATGTCCACGAGAACTGTCGTA 536613
Query 280276 TGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTA 280335
| |||||| | || ||||||||| |||||||| |||||||| |||| |||||||
Sbjct 536612 TCGCTTACATTAAGCAACACGCTTTCGCACACATCGATAACCACCTTGACAAGACTCCTT 536553
Query 280336 ACCAATACATTCAGTGGCG 280354
|||| || || |||||
Sbjct 536552 CTGAATATATCCAATGGCG 536534
>seq120
Length=38756
Score = 95.1 bits (104), Expect = 2e-14
Identities = 335/522 (64%), Gaps = 6/522 (1%)
Strand=Plus/Plus
Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576
||| || || |||||||||| ||| | ||||| | ||| ||||| |||||
Sbjct 28890 TGAGTTTATTAACAAGGAGCTGATTTTGTTCTCTATGGCCGATAACATTCGTTCGATTCC 28949
Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636
| ||||||| | ||||| || |||||||| |||| | ||||| ||
Sbjct 28950 ATCTCTTATGGATGGTTTTAAGCCTGGACAACGTAAGATTCTCTACGGTTGTTTCAAACG 29009
Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696
||||| || | ||||| || || || || || |||||||||||| |||| ||||
Sbjct 29010 TAACCTCGTCAATGAAATCAAAGTAGCACAATTGGGTGGTTATGTATCTGAAAACACTGG 29069
Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756
|||||||| |||||||| || | | ||||| || |||| ||||| | |||
Sbjct 29070 ATACCATCATGGTGAGCAATCGTTGTATCAAACAATTGTTGGTTTGGCTCAGGATTTTGT 29129
Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGG 218816
|| || ||||| |||| | | || || ||| |||||||| ||| ||||
Sbjct 29130 TGGATCCAATAACATCTACTTTTTAATGCCTAATGGTAGTTTTGGTTCCCGTGCCATGGG 29189
Query 218817 TGGAAAGGATAGTGCTTCTG---CCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCG 218873
||||| || |||||| | | | ||||| || || || || | ||||| |
Sbjct 29190 CGGAAAAGA---TGCTTCGGCACCTCGTTATATTTTCACTGAGCTGAATTCTTTGACGAG 29246
Query 218874 CCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTC 218933
|| | ||| ||| |||||| || ||||| | || || |||| |||| |
Sbjct 29247 AAAGATTTTCCATCCTCACGATGACCCACTATACAAGTACATGGAAGATGATGATTCTAC 29306
Query 218934 GATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGG 218993
| ||||| || ||||| | || || || | | || ||||| |||| | ||
Sbjct 29307 TGTGGAGCCAGAATGGTACGCACCAATCATCCCCACTGTTCTAGTAAACGGTGGTGAAGG 29366
Query 218994 TATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCC 219035
|| || || || | ||||| ||||||||| |||||| ||
Sbjct 29367 CATTGGTACTGGTTGGAGTACAAACATTCCTTGTTACAACCC 29408
>seq78
Length=1347436
Score = 91.5 bits (100), Expect = 3e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 251526 CATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTC 251585
||| ||||||| ||| || ||||| || | ||||||||||||| ||| ||
Sbjct 284243 CATGACACCTGCTTTTTGGTAGTCAGAGACTCTCTTCTCGAAGAAATTAGTCTTACCAGA 284302
Query 251586 CAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCC 251645
|||||||| ||||||||| |||||||| || || |||||||| |||| | ||
Sbjct 284303 GAGAGAGATGTTCTCCATGAAATCGAAGGGATTAGTAGCATTGTAGACCTTGTTGTTTCC 284362
Query 251646 AAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTT 251705
||| | | || | | ||| || |||||||| | || || | ||| || | || ||
Sbjct 284363 AAGGGAAAGCAATAATCTGTCAGCGACAAACTCAATGTATTGACACATGAGCTTAGCATT 284422
Query 251706 CATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTC 251753
||| |||| | || ||| || | || ||| | ||||||||||||
Sbjct 284423 CATTCCAAGAAGACTACATGGCAAGGCATCAGTCAAGAATTCCTTTTC 284470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027834613919606
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |