Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq32 114 3e-20 seq111 109 1e-18 seq90 109 1e-18 >seq32 Length=396137 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| |||||||||||| || || || | Sbjct 380979 CCACCACGGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAA 381038 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | ||| || || ||||| |||| ||||||||| |||||| Sbjct 381039 AGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTG---GTCTGGG 381095 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||| || | || || || || || | ||| ||||| Sbjct 381096 GGAATACCCTCCTTGTCTTGGATCTTGGTCTTAACATTATCGATGGTGTCGGAAGATTCA 381155 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| ||||| ||||| || |||| ||||||||||| || ||||| Sbjct 381156 ACTTCGAGAGTGATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 381205 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| || | |||||||| || || || || |||||| Sbjct 380559 TCCTTCTGGATGTTGTAGTCAGAGAGGGTTCTGCCGTCTTCCAACTGCTTACCAGCGAAG 380618 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| ||||| |||||| || || || || || ||||| || | || ||| Sbjct 380619 ATAAGACGTTGTTGG---TCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGTCTTGACG 380675 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || ||||| ||||| ||||| ||||||||||||||| Sbjct 380676 TTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTG 380735 Query 288460 ACGAATATCTGCAT 288473 || || || ||||| Sbjct 380736 ACAAAGATTTGCAT 380749 Score = 107 bits (118), Expect = 5e-18 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| |||||||||||| || || || | Sbjct 381663 CCACCACGGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAA 381722 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || |||||||| | ||| || || ||||| |||| ||||||||| ||| Sbjct 381723 AGAGTACGACCGTCTTCCAGTTGCTTACCAGCGAAAATCAAACGCTGTTG---GTCTGGA 381779 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| || || || || || | || ||||| || || | || || || Sbjct 381780 GGAATACCTTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCG 381839 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || ||||| ||||| || || || ||||| ||||| || ||||||||| Sbjct 381840 ACCTCAAGAGTGATGGTCTTACCAGTAAGGGTCTTTACGAAGATTTGCATTATG 381893 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | || | ||| || |||||||| || ||||||| Sbjct 380751 CCACCACGCAGACGAAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 380810 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| || || | ||| || || ||||| |||| ||||||||| |||||| Sbjct 380811 AGGGTTCTTCCATCCTCAAGTTGCTTACCAGCGAAAATCAAACGCTGTTGG---TCTGGG 380867 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||| || | || ||||| || || | ||| || || Sbjct 380868 GGAATGCCCTCCTTGTCTTGGATCTTGGTCTTAACGTTGTCGATGGTGTCGGAAGACTCG 380927 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || || ||||||||||| || ||||| Sbjct 380928 ACCTCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 380977 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| ||||| |||| || || |||||||| || ||||| | | Sbjct 381435 CCACCACGGAGACGAAGGACGAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAG 381494 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | ||| || || || ||||| || | ||||| |||||| Sbjct 381495 AGAGTACGGCCATCCTCGAGTTGCTTGCCAGCAAAGATGAGTCTTTGTTGG---TCTGGG 381551 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||| || | || || || || |||| ||| ||||| Sbjct 381552 GGAATACCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCAATAGTATCAGAAGATTCG 381611 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || |||| ||||||||||| || ||||| Sbjct 381612 ACCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 381661 Score = 100 bits (110), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| ||||| || | || || ||||| || || ||||| | Sbjct 381207 CCACCACGGAGACGAAGGACGAGGTGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAA 381266 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || || | ||| || || || ||||| || | ||||| |||||| Sbjct 381267 AGAGTTCTGCCATCCTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGG---TCTGGG 381323 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || |||||||| || || | || || || || || | || || ||| Sbjct 381324 GGAATACCCTCCTTATCCTGAATCTTGGTCTTAACATTATCGATGGTGTCAGAAGACTCT 381383 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| ||||| ||||| || || |||||||||||||| || ||||| Sbjct 381384 ACTTCGAGAGTGATAGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 381433 >seq111 Length=751517 Score = 109 bits (120), Expect = 1e-18 Identities = 136/185 (74%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | || || | || ||||| | ||| || || |||||| Sbjct 299220 TCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTGCCATCTTCGAGTTGCTTACCAGCGAAG 299161 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| |||||| |||||| |||||||| || |||||||| || | || || Sbjct 299160 ATAAGACGTTGTTGA---TCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGTCTTGACA 299104 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || || || ||||| ||||| ||||| || || || |||||| Sbjct 299103 TTGTCAATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTG 299044 Query 288460 ACGAA 288464 ||||| Sbjct 299043 ACGAA 299039 >seq90 Length=207308 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | || || |||||||| || || || | Sbjct 159063 CCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGAA 159122 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | ||| || || || ||||||| ||| |||||| |||||| Sbjct 159123 AGAGTACGACCGTCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGA---TCTGGG 159179 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || ||||| || | || || || || || | ||| || || Sbjct 159180 GGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGACTCA 159239 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 159240 ACCTCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCAT 159289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179651891022548