Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq32 105 7e-18
seq90 102 8e-17
seq111 91.5 1e-13
>seq32
Length=396137
Score = 105 bits (116), Expect = 7e-18
Identities = 144/196 (73%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGA 138479
||||||||||||||||||||||| | ||| | || | ||||||||||| ||||| |
Sbjct 381240 GACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTGCCA-TCCTCGAGTTGCTTACCAGC 381298
Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539
| |||| || | |||||||| || || ||||| || || || ||| | || || ||||
Sbjct 381299 AAAGATAAGTCTTTGTTGGTCTGGGGGAATACCCTCCTTATC-CTGAATCTTGGTCTTAA 381357
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
| || | |||||| | ||||| || |||| || | || |||||||| ||||| |
Sbjct 381358 CATTATCGATGGTGTCAGAAGACTCTACTTCGAGAGTGATAGTCTTACCAGTGAGAGTCT 381417
Query 138599 TTACAAAAATCTGCAT 138614
| || || || |||||
Sbjct 381418 TGACGAAGATTTGCAT 381433
Score = 100 bits (110), Expect = 3e-16
Identities = 142/196 (72%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| || ||||| |||||||| || | |||||| ||| || ||||| ||||| |
Sbjct 381696 GATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCTTCCAGTTGCTTACCAGCG 381755
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
| || | |||||||||||| ||||| |||||||| ||||| ||| | || || || |
Sbjct 381756 AAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTC-TTGAATCTTGGTCTTGAC 381814
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | |||||| | ||||| ||||| | || | || |||||||| || || |
Sbjct 381815 GTTG-TCGATGGTGTCAGAAGACTCGACCTCAAGAGTGATGGTCTTACCAGTAAGGGTCT 381873
Query 138599 TTACAAAAATCTGCAT 138614
|||| || || |||||
Sbjct 381874 TTACGAAGATTTGCAT 381889
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||| | ||||| || | | ||||||||||| ||||||||||||
Sbjct 380751 CCACCACGCAGACGAAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 380810
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || | ||||| ||||| ||||| | | || | |||||||||||| || ||
Sbjct 380811 AGGGTTCTTCCATCCTCAAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGA 380870
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| || | || || |||| ||| || | |||||||| ||||| |
Sbjct 380871 ATGCCCTCCTTGTC-TTGGATCTTGGTCTTAACGTTG-TCGATGGTGTCGGAAGACTCGA 380928
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || |||||||| || || || || || || |||||
Sbjct 380929 CCTCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 380977
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| || ||||| |||||||| || | |||||| ||||||||||| ||||| |
Sbjct 381012 GATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCCATCCTCGAGTTGCTTACCAGCG 381071
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
| || | |||||||||||| || || ||||| || ||||| || | || || ||||
Sbjct 381072 AAAATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTC-TTGGATCTTGGTCTTAAC 381130
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| || | |||||||| || || || |||| || | || |||||||||| || ||
Sbjct 381131 ATTATCGATGGTGTCGGAAGATTCAACTTCGAGAGTGATGGTCTTACCAGTCAAGGTCTT 381190
Query 138600 TACAAAAATCTGCAT 138614
|| || || |||||
Sbjct 381191 GACGAAGATTTGCAT 381205
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | || || || | | | |||||||| || |||||||||||
Sbjct 380523 CCGCCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 380582
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || | ||| || | || ||||| | |||| ||||| |||||||| || ||
Sbjct 380583 AGGGTTCTGCCGTCTTCCAACTGCTTACCAGCGAAGATAAGACGTTGTTGGTCTGGGGGA 380642
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| || | || || || | ||| || | |||||| | ||||| |
Sbjct 380643 ATGCCCTCCTTGTC-TTGGATCTTGGTCTTGACGTTG-TCGATGGTGTCAGAAGACTCGA 380700
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||||| || | || || || |||||||| || ||||| || |||||
Sbjct 380701 CCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATTTGCAT 380749
>seq90
Length=207308
Score = 102 bits (112), Expect = 8e-17
Identities = 141/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||||||||| |||||||| || | |||||| |||||| ||||| ||||| | |
Sbjct 159096 GACTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCCTCAAGTTGCTTACCAGCA 159155
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539
|||| | ||| ||||| || || || || || || ||||| ||| || | || |
Sbjct 159156 AAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACA 159215
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||||| ||||| ||||||| || | || ||||| || || || ||
Sbjct 159216 TTG-TCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGTAAGGGTCTT 159274
Query 138600 TACAAAAATCTGCAT 138614
|| ||||| |||||
Sbjct 159275 GACGAAAATTTGCAT 159289
>seq111
Length=751517
Score = 91.5 bits (100), Expect = 1e-13
Identities = 156/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| |||||| | || | || | | ||||||||||| |||||||||||
Sbjct 299256 CCACCTCTCAAACGGAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 299197
Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || | || | || |||||||| ||||| | |||| ||||| ||||| || || ||
Sbjct 299196 AGGGTTCTGCCA-TCTTCGAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGGGG 299138
Query 138507 TATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| ||||| ||| || | || |||| || | |||||||| ||||| |
Sbjct 299137 AATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTG-TCAATGGTGTCGGAAGACTCGA 299079
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606
|||||| || | || |||||||| || || || || |||
Sbjct 299078 CCTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAAA 299038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261370255520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |