Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq32 105 7e-18 seq90 102 8e-17 seq111 91.5 1e-13 >seq32 Length=396137 Score = 105 bits (116), Expect = 7e-18 Identities = 144/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGA 138479 ||||||||||||||||||||||| | ||| | || | ||||||||||| ||||| | Sbjct 381240 GACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTGCCA-TCCTCGAGTTGCTTACCAGC 381298 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 | |||| || | |||||||| || || ||||| || || || ||| | || || |||| Sbjct 381299 AAAGATAAGTCTTTGTTGGTCTGGGGGAATACCCTCCTTATC-CTGAATCTTGGTCTTAA 381357 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | |||||| | ||||| || |||| || | || |||||||| ||||| | Sbjct 381358 CATTATCGATGGTGTCAGAAGACTCTACTTCGAGAGTGATAGTCTTACCAGTGAGAGTCT 381417 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 381418 TGACGAAGATTTGCAT 381433 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || ||||| |||||||| || | |||||| ||| || ||||| ||||| | Sbjct 381696 GATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCTTCCAGTTGCTTACCAGCG 381755 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || | |||||||||||| ||||| |||||||| ||||| ||| | || || || | Sbjct 381756 AAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTC-TTGAATCTTGGTCTTGAC 381814 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| | ||||| ||||| | || | || |||||||| || || | Sbjct 381815 GTTG-TCGATGGTGTCAGAAGACTCGACCTCAAGAGTGATGGTCTTACCAGTAAGGGTCT 381873 Query 138599 TTACAAAAATCTGCAT 138614 |||| || || ||||| Sbjct 381874 TTACGAAGATTTGCAT 381889 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||||| || | | ||||||||||| |||||||||||| Sbjct 380751 CCACCACGCAGACGAAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 380810 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||||| ||||| ||||| | | || | |||||||||||| || || Sbjct 380811 AGGGTTCTTCCATCCTCAAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGA 380870 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| || | || || |||| ||| || | |||||||| ||||| | Sbjct 380871 ATGCCCTCCTTGTC-TTGGATCTTGGTCTTAACGTTG-TCGATGGTGTCGGAAGACTCGA 380928 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || |||||||| || || || || || || ||||| Sbjct 380929 CCTCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 380977 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || ||||| |||||||| || | |||||| ||||||||||| ||||| | Sbjct 381012 GATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCCATCCTCGAGTTGCTTACCAGCG 381071 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || | |||||||||||| || || ||||| || ||||| || | || || |||| Sbjct 381072 AAAATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTC-TTGGATCTTGGTCTTAAC 381130 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||||| || || || |||| || | || |||||||||| || || Sbjct 381131 ATTATCGATGGTGTCGGAAGATTCAACTTCGAGAGTGATGGTCTTACCAGTCAAGGTCTT 381190 Query 138600 TACAAAAATCTGCAT 138614 || || || ||||| Sbjct 381191 GACGAAGATTTGCAT 381205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || || || | | | |||||||| || ||||||||||| Sbjct 380523 CCGCCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 380582 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || | || ||||| | |||| ||||| |||||||| || || Sbjct 380583 AGGGTTCTGCCGTCTTCCAACTGCTTACCAGCGAAGATAAGACGTTGTTGGTCTGGGGGA 380642 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| || | || || || | ||| || | |||||| | ||||| | Sbjct 380643 ATGCCCTCCTTGTC-TTGGATCTTGGTCTTGACGTTG-TCGATGGTGTCAGAAGACTCGA 380700 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || || |||||||| || ||||| || ||||| Sbjct 380701 CCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATTTGCAT 380749 >seq90 Length=207308 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| || | |||||| |||||| ||||| ||||| | | Sbjct 159096 GACTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCCTCAAGTTGCTTACCAGCA 159155 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539 |||| | ||| ||||| || || || || || || ||||| ||| || | || | Sbjct 159156 AAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACA 159215 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||||| ||||||| || | || ||||| || || || || Sbjct 159216 TTG-TCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGTAAGGGTCTT 159274 Query 138600 TACAAAAATCTGCAT 138614 || ||||| ||||| Sbjct 159275 GACGAAAATTTGCAT 159289 >seq111 Length=751517 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | || | || | | ||||||||||| ||||||||||| Sbjct 299256 CCACCTCTCAAACGGAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 299197 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | || |||||||| ||||| | |||| ||||| ||||| || || || Sbjct 299196 AGGGTTCTGCCA-TCTTCGAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGGGG 299138 Query 138507 TATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| || | || |||| || | |||||||| ||||| | Sbjct 299137 AATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTG-TCAATGGTGTCGGAAGACTCGA 299079 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606 |||||| || | || |||||||| || || || || ||| Sbjct 299078 CCTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAAA 299038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261370255520