Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq32 111 1e-19 seq90 102 6e-17 seq111 93.3 3e-14 >seq32 Length=396137 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || || || |||||||| ||||||||||| ||| | | ||||||| Sbjct 381681 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCTTCC 381740 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || |||||| | ||||||||||||||||| ||||| ||||||||||| | Sbjct 381741 AGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGA 381800 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| | || || | || || || || | || || || | || ||||| ||| Sbjct 381801 ATCTTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCAAGAGTGATGGTCTTA 381860 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || ||||| || |||||||| Sbjct 381861 CCAGTAAGGGTCTTTACGAAGATTTGCAT 381889 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||||| || || || || || ||||| |||||||| ||| Sbjct 380751 CCACCACGCAGACGAAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 380810 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | || || | ||| || |||||| | ||||||||||||||||| ||| Sbjct 380811 AGGGTTCTTCCATCCTCAAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGA 380870 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || |||||||| || ||| | || || | || || || ||| | || || Sbjct 380871 ATGCCCTCCTTGTCTTGGATCTTGGTCTTAACGTTGTCGATGGTGTCGGAAGACTCGACC 380930 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| ||||| ||||| || || || || || || ||||||||| Sbjct 380931 TCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCATA 380978 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || || || |||||||| ||||||||||| ||| | | | || || Sbjct 380997 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCCATCCTCG 381056 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || |||||| | ||||||||||||||||| ||||| || |||||||| Sbjct 381057 AGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGG 381116 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| | || ||| | || || || ||| | ||| || || | || ||||| ||| Sbjct 381117 ATCTTGGTCTTAACATTATCGATGGTGTCGGAAGATTCAACTTCGAGAGTGATGGTCTTA 381176 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || || || ||||||||| Sbjct 381177 CCAGTCAAGGTCTTGACGAAGATTTGCATA 381206 >seq90 Length=207308 Score = 102 bits (112), Expect = 6e-17 Identities = 151/213 (71%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || ||||| || ||||| ||||||||||| ||| | | |||| || | ||| Sbjct 159087 TGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCCTCAAGTTGC 159146 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||||||| ||||| || |||||||| |||||||| || ||| Sbjct 159147 TTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTG 159206 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || ||| | || || || ||| | || || || | ||| ||||| ||||| || Sbjct 159207 GTCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGTA 159266 Query 15154 AGAGTTTTTACAAAAATTTGCATATTTGAAATA 15186 || || || || ||||||||||| || ||||| Sbjct 159267 AGGGTCTTGACGAAAATTTGCATCGTT-AAATA 159298 >seq111 Length=751517 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||| | | || | ||||| ||||| || ||||| |||||||| || Sbjct 299256 CCACCTCTCAAACGGAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 299197 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| | ||| || |||||| | || | ||| ||||| || ||| Sbjct 299196 AGGGTTCTGCCATCTTCGAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGGGGA 299137 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| | || ||| | || || || ||| | || || Sbjct 299136 ATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCGGAAGACTCGACC 299077 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15168 || | ||| ||||| ||||| || || || || || ||| Sbjct 299076 TCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAAA 299038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391276951310