Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq90 98.7 9e-16 seq32 98.7 9e-16 >seq90 Length=207308 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| ||||| || |||||||| | || ||| || || || || || ||| Sbjct 159093 GTAGACTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCCTCAAGTTGCTTACCA 159152 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| || || ||||| || || || ||||||||||| ||| || |||| Sbjct 159153 GCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTG 159212 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | | ||| || |||| ||| | || || ||||| || || Sbjct 159213 ACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGTAAGGGTC 159272 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||| ||||| Sbjct 159273 TTGACGAAAATTTGCAT 159289 >seq32 Length=396137 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | ||| || |||||| |||| | || || || || || || |||||||||||| Sbjct 380595 TCTTCCAACTGCTTACCAGCGAAGATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTG 380654 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 || ||| || ||||| |||| |||| |||||| | | |||||| |||| ||| | Sbjct 380655 TCTTGGATCTTGGTCTTGACGTTG-TCGATGGTGTCAGAAGACTCGACCTCGAGGGTGAT 380713 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||||||||| || ||||| || ||||| Sbjct 380714 GGTCTTGCCGGTCAGAGTCTTGACAAAGATTTGCAT 380749 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||||| || ||||| ||| | || | ||| || || || || ||| Sbjct 380781 GTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCATCCTCAAGTTGCTTACCA 380840 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||| ||||| || || || || |||||||||||||| ||| || ||| Sbjct 380841 GCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGTCTTA 380900 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | | |||||| || | ||| | || || || || || || Sbjct 380901 ACGTTG-TCGATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTCTTACCAGTGAGGGT 380959 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 380960 CTTGACGAAGATTTGCAT 380977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499813335840