Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq32 113 4e-20 seq90 93.3 4e-14 >seq32 Length=396137 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||| || || || || |||| | || ||||| || Sbjct 380547 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCTGCCGTCTTCCAACTGC 380606 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | ||||| ||||| || |||||||| || || ||||| || || Sbjct 380607 TTACCAGCGAAGATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTG 380666 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||| ||||||||||| ||||| || | || |||||||| Sbjct 380667 GTCTTGA-CGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 380725 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || ||||| |||||||| Sbjct 380726 CAGAGTCTTGACAAAGATTTGCAT 380749 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| || || || || ||||||||||| || || ||| | |||| | ||| || Sbjct 380769 ACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCATCCTCA 380828 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| || || ||| | ||||| || || ||||| || |||||||| || || ||||| Sbjct 380829 AGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 380888 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 | | || || | | || | || | |||||||||||||||||| || || || | || || Sbjct 380889 A-TCTTGGTCTTAACGTTGTCGATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTCTT 380947 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || |||||||| Sbjct 380948 ACCAGTGAGGGTCTTGACGAAGATTTGCAT 380977 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| |||||||| || ||||| | || | || |||| ||| Sbjct 381687 TGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCTTCCAGTTGC 381746 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| || || ||||| || ||||| ||||| || |||||||| || Sbjct 381747 TTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTG 381806 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||| ||||||||||| || ||||| | || || || || Sbjct 381807 GTCTTGA-CGTTGTCGATGGTGTCAGAAGACTCGACCTCAAGAGTGATGGTCTTACCAGT 381865 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || |||||||| Sbjct 381866 AAGGGTCTTTACGAAGATTTGCAT 381889 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || || || |||||||| || || || || Sbjct 381204 ATACCACCACGGAGACGAAGGACGAGGTGGAGAGTAGACTCCTTTTGAATGTTGTAGTCA 381263 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | ||| || || || | || | || ||| ||||| || Sbjct 381264 GAAAGAGTTCTGCCATCCTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGG 381323 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || ||||| ||||| || || | | | | || | |||||| |||||||| Sbjct 381324 GGAATACCCTCCTTATCCTGAATCTTG-GTCTTAACATTATCGATGGTGTCAGAAGACTC 381382 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||| | || || || || ||||| || || || |||||||| Sbjct 381383 TACTTCGAGAGTGATAGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 381433 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| |||||||| || ||||| | || ||| || | ||| Sbjct 381003 TGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCCATCCTCGAGTTGC 381062 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| || || ||||| || ||||| || || || ||||| || || Sbjct 381063 TTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTG 381122 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | | | | || | |||||||||||| || ||||||||||| | || || || || Sbjct 381123 -GTCTTAACATTATCGATGGTGTCGGAAGATTCAACTTCGAGAGTGATGGTCTTACCAGT 381181 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || |||||||| Sbjct 381182 CAAGGTCTTGACGAAGATTTGCAT 381205 >seq90 Length=207308 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || || || || ||||||||||| || ||||| Sbjct 159063 CCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGAA 159122 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | || || | ||| || || || | ||||| ||||| || || || ||| Sbjct 159123 AGAGTACGACCGTCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGA 159182 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || ||||| || || |||| || | ||||||||||||||| || Sbjct 159183 ATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGACTCAACC 159242 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 ||||| || | || || ||||| || || || || ||||||||||||| Sbjct 159243 TCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCATCG 159291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002262093360