Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq79 131 2e-25 seq155 118 1e-21 seq78 113 6e-20 >seq79 Length=299291 Score = 131 bits (144), Expect = 2e-25 Identities = 599/933 (64%), Gaps = 19/933 (2%) Strand=Plus/Minus Query 116424 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 116483 |||||||| | || |||| ||||| |||| || || | || |||||| | Sbjct 119027 AGGAAGGGACAAAGAAGCCAAGTTACAAACAGCCACTTCTTCAGGAGAAGAGTACTCGAC 118968 Query 116484 AATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 116543 |||||| ||||| || ||| || || || |||| ||| | |||||| ||| | Sbjct 118967 AATTTCACAGCACAAGTTGGAAGATTTGATAGTACCCAGGTTTTGTTGATTACTCTTGCT 118908 Query 116544 GTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 116603 |||||| ||||||||||||||||| | || | || ||||| ||||||| || || || Sbjct 118907 GTTACAAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTTTGGGCCTCAAGGAT 118848 Query 116604 AGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACT 116662 ||| | ||| | | || | | || | | ||| | || || || | || |||| Sbjct 118847 AGCATACCAGAGCTTCTGAGCCTTG-ATAGTTCTTCTACCTTTGCCTTCTTTTTCATACT 118789 Query 116663 TTGTGTAGAGGGCCTCAAACTCTTCACCCACAG-CCTCTGAGAGCCCTGGTGCCTTATCT 116721 || |||||||| |||| || || ||| || |||| | || || || || Sbjct 118788 TTTCATAGAGGGCAACAAATTCGTC-TCCATAGACCTCGTCCAAACCAGGACACTCATTA 118730 Query 116722 GGACAGAAGAGAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGA 116779 || || | | || ||| | || | | ||| || | ||||||||| | ||| |||| Sbjct 118729 GGGCACATCAAAGTCCAAT--CCTCGTTAGCCTTGACTCTCTTCATGAACAAGTCGGGGA 118672 Query 116780 TCCAGAGCGCCGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 116838 |||| || ||| |||| | ||| | | || || ||||||| | || || || ||| Sbjct 118671 TCCAAAGGGCCAAGAACAAATCTCTGGCA-CGGACTTCTTCCTTACCGTGGTTCTTTCGC 118613 Query 116839 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 116898 || || | || || | | ||| ||||||| || |||| ||||| |||| | | || Sbjct 118612 AAGTCGATGAATTCAAAAACATCGTCGTGCCAAGGCTCCAAGTACATGGCGAAAG-CACC 118554 Query 116899 TTGCGAC----GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCAT 116954 | | | |||| | |||| ||||| || || || ||| || || | | ||| Sbjct 118553 TGGTCTCTTGTTACCACCTTGGTCAACATATCTAGCAGTGTTGTTGAAAACTCTCAACAT 118494 Query 116955 TGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGAC 117014 || | ||||| | ||| || || || || |||| || |||| | || Sbjct 118493 AGGGACAATACCGTTAGAAGTACCGTTAGTACCGGCAATATAGGAACCAGTGGCACGGAT 118434 Query 117015 ATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAG 117074 || |||||| || ||||||||| ||||| |||| ||||| || || | | | Sbjct 118433 ATTGTGGATACTCAAACCAATACCACCTGCAGACTTCGAGATCAAGGCACAGGTCTTCAA 118374 Query 117075 ACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACAT 117134 | | | ||||| || || || |||||| |||| | | | ||| || |||||| Sbjct 118373 AGTATCATAGATACCCTCAATGGAGTCATCCTTCATGTTTACCAAGAAACAAGACGACAT 118314 Query 117135 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTT 117193 ||||||| | || |||||||| ||| | | || || | || | || || ||| || Sbjct 118313 TTGTGGCTTGGGAGTACCAGCATTGTACAAAGTAGGAGAAGCAT-GAGTAAAGTACTTTT 118255 Query 117194 GGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTG 117253 | ||||| | || ||| || || | | | || |||||| | || || ||||| | | Sbjct 118254 GTGACATGTAATTGTAAGTTTCAATGGCCTTGGCAATGTCCGCGCCATGGATACCAACAG 118195 Query 117254 AGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGT 117313 || | ||| | ||| | ||| ||| | || | | || | || | | | | || Sbjct 118194 CTACTCTCATGATCATATGTTGAGGTCTCTCAGCAATTTTTCCGTTGATCTTGAGCAAGT 118135 Query 117314 AA-CTCTTCTCCAAGGTCTTGAGACCAAAATAG 117345 || |||| ||||||||||||| ||| || ||| Sbjct 118134 AAGATCTT-TCCAAGGTCTTGAAACCGAAGTAG 118103 >seq155 Length=566151 Score = 118 bits (130), Expect = 1e-21 Identities = 678/1070 (63%), Gaps = 45/1070 (4%) Strand=Plus/Minus Query 115549 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 115608 || |||| ||| | || ||||| || |||||||| |||| ||||||| | || | |||| Sbjct 483782 GCTTTTGTTCGTAAATAATACATTCCTGTCTTGAGTCCCTTCTTCCAGCCGTAGAAATGC 483723 Query 115609 ATTGAGGACAACTTGGAGAGT-GTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTG 115667 || | || || | ||| || ||| ||| |||||| | ||||||||||| || || Sbjct 483722 ATACTAGT-AAGTTTGCCAGTAGTGGGATTTTTCATGAAAATATTCATACTTTGAGACTG 483664 Query 115668 ATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCA 115727 || ||| | || || || || || |||||||| || | | ||| | | |||||| Sbjct 483663 GTCAATGTATCGACCGCGGTCGGCGGCCATATCGATTATCACTTTCTGGCTCAATTCCCA 483604 Query 115728 CACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCC 115787 | || | || | | ||| | ||| |||| || || || |||||||||||||| Sbjct 483603 GGCCGTCTTATATATCTCCTTCAAATCGCCTGGAATCTCATTAATGTTTTGGATAGAGCC 483544 Query 115788 A-CCTGCCT--TGACCATGAGATCCTTCATATC--CTTTGACCAGAGACCAATCTTCTTG 115842 | | || || | | |||| | | | ||||| | || ||| | ||| | | Sbjct 483543 ATCTTGACTAATTATCATG---TGCCTGATATCAGCATT--CCACAAACCTAATTGGGCT 483489 Query 115843 AGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA 115902 |||||| || || | | |||||||| || || || | ||| |||| | Sbjct 483488 AGATCCCTTACAAGATATTCATTGACAATTTGGAATTCGCCAGAAAGGACCCGTCGAGTA 483429 Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || || || | ||| ||| ||||| ||||| ||| ||| | ||||| | || || Sbjct 483428 TATATATTTGATGTGATTGGTTCAAAACACTCGTTGAAACCAAGAATTTGCGAAGTCGAA 483369 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| ||||| | | | || | || || | | | ||| | Sbjct 483368 GCGGTGGGCATTGGTGCGACAACTAAAGAATTCCTAAGTCCAAACTCGGAAATATCACGC 483309 Query 116023 TTGAGGGCGTCCCAGT----------CGTAG--TTGAGCTTTGTCTCCCCCTCCCACATA 116070 || | | ||||||| ||| | |||| | | ||| | |||||| | Sbjct 483308 TTTAAGCTCTCCCAGTCCCATAAATCCGTCGCCTTGAAATCAGGCTCAC---CCCACAAA 483252 Query 116071 TCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCA 116130 || || || | || || | || || || || ||| | | | || ||||| || | Sbjct 483251 TCGAATTGCAACATCCCCTTCGAAGCGGGAGAACCCGAATAACTATCGTATGGTCCGTTT 483192 Query 116131 ACCTCCGCCA-ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCG 116189 | | || | | | || | ||||||| || || ||||| || || ||||| || | Sbjct 483191 TCTTTGGCTAGCTCCATAGAT-GCCTCGACTGCCGCATGATATATAGTTTCAAATATTTG 483133 Query 116190 AGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACG--GCACAAAATAAATACA 116247 |||| | | |||| || || ||||| | | ||| | | |||| | | Sbjct 483132 CACATTAAGTAATCTGGCTTCAGACGAGTCAAATGGCATACGCAGTTTCATATAAGT--A 483075 Query 116248 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 116307 || || | |||||||| |||| | || || | ||| ||| ||||||| | | || Sbjct 483074 TCTGCCAATCCTTGGACTCCGACAGCTATGGGTCTGTGTTTCACATTAGACCTCCTCGCA 483015 Query 116308 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 116367 | || |||||||| ||| | || || | | | || |||||| | | ||| || || Sbjct 483014 GATTCGACGGGATAGTCATTGATGTCTATGATCTTGTTCAGATTTCTAGCGACTACTTTG 482955 Query 116368 GTGATTTCATGAAGCTTTTC---GTAAT-CAAAACTGCGA----GT-CTCTTCATTG--- 116415 | | ||||||||||||||| || || | | || | | || ||| || | | Sbjct 482954 GCAACTTCATGAAGCTTTTCAAAGTCATACCATACCTCAACATCGTCCTCGTCGTAGTGT 482895 Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475 ||| || | || | || || || || |||||||| |||| ||||||||| | | Sbjct 482894 ACAAACGTTGGTAACGCTATAGAGGCGAGATTACAAACAGCGGTCTCATCAGGAGACGAA 482835 Query 116476 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 116535 || | || ||||| |||||||||||||| ||||| ||||| | || || || ||| Sbjct 482834 TATTGTACTATTTCGGTACACAAATTTGACGATTTAATTGTGCCAAGATTATTCTGGTTT 482775 Query 116536 GACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTC 116585 ||||| ||| || ||||| || || |||||| |||| | || ||||| Sbjct 482774 GACTTCCGGTTGCATGCATCTTTATATAGCATAAATGGATTACCAGTCTC 482725 >seq78 Length=1347436 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || || ||||| || || | ||||| ||||| || ||| ||||| ||||| |||||| Sbjct 284568 CCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAAACCAGGCATAAGACCACGCTTC 284627 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 |||||||| || || | |||||| |||||||||||||| ||||| ||| ||||| Sbjct 284628 TTCAACCAAAAGATACTAGCAAATGAACCAGAGAAGAAGATACCCTCGACAGCAGCGAAA 284687 Query 127658 GCAAATAGACGCTCGGCAAAGG 127679 |||| |||||||| ||||||| Sbjct 284688 GCAACGAGACGCTCAGCAAAGG 284709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505926972560