Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq32 134 3e-26 seq111 129 1e-24 seq90 116 9e-21 >seq32 Length=396137 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||||||||| ||||||||||| | ||||||||||| | ||| || ||||| Sbjct 381222 AGGACGAGGTGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTGCCATCC 381281 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || || ||||| || | || ||||| || ||| || || ||| Sbjct 381282 TCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGGGGAATACCCTCCTTATCC 381341 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| |||||| | | ||||| || | ||||| ||| Sbjct 381342 TGAATCTTGGTCTTAACATTATCGATGGTGTCAGAAGACTCTACTTCGAGAGTGATAGTC 381401 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || || || ||||| Sbjct 381402 TTACCAGTGAGAGTCTTGACGAAGATTTG 381430 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || |||||||| |||| ||||||||||| | || || || ||| Sbjct 380538 AGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCTGCCGTCT 380597 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || |||||||| ||||| || ||||| || ||| || || || Sbjct 380598 TCCAACTGCTTACCAGCGAAGATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCT 380657 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 380658 TGGATCTTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATGGTC 380717 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || ||||| ||||| Sbjct 380718 TTGCCGGTCAGAGTCTTGACAAAGATTTG 380746 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||||||||| ||||||||||||| ||||||||| | | || |||||||| Sbjct 380766 AGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCATCC 380825 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || ||||| || | |||||| ||||| || ||| || || || Sbjct 380826 TCAAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCT 380885 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 380886 TGGATCTTGGTCTTAACGTTGTCGATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTC 380945 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || ||||| Sbjct 380946 TTACCAGTGAGGGTCTTGACGAAGATTTG 380974 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| ||||||||||||| ||||||||||| | ||| | ||||| Sbjct 381450 AGGACGAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCC 381509 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || || |||||||| | || ||||| || ||| || || || Sbjct 381510 TCGAGTTGCTTGCCAGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATACCCTCCTTGTCT 381569 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | || || | | ||| || || | || || ||| Sbjct 381570 TGGATCTTGGTCTTGACATTGTCAATAGTATCAGAAGATTCGACCTCAAGGGTAATAGTC 381629 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || ||||| Sbjct 381630 TTGCCAGTCAAGGTCTTGACGAAGATTTG 381658 >seq111 Length=751517 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| ||||| ||||||||||||| ||||||||||| | || || |||||| Sbjct 299241 AGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTGCCATCT 299182 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || |||||||| ||||| || || || || ||||||||| ||| Sbjct 299181 TCGAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCC 299122 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | |||||| | | || || || | ||||| ||| Sbjct 299121 TGGATCTTGGTCTTGACATTGTCAATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTC 299062 Query 199598 TTACCCGTGAGAGTTTTCACAAAA 199621 ||||| || || || || || ||| Sbjct 299061 TTACCAGTAAGGGTCTTGACGAAA 299038 >seq90 Length=207308 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||||||||| ||||||||||||| |||||| |||| | ||| | || || Sbjct 159078 AGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCC 159137 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || || ||||| | ||| || || || || |||||| || || Sbjct 159138 TCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCT 159197 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 159198 TGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 159257 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || |||||||| Sbjct 159258 TTACCGGTAAGGGTCTTGACGAAAATTTG 159286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178919092581122