Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq32 111 2e-19
seq90 95.1 1e-14
seq111 82.4 9e-11
>seq32
Length=396137
Score = 111 bits (122), Expect = 2e-19
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||||||||| ||||||||||| || || | | || || || ||||| || |||||
Sbjct 380786 CTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCATCCTCAAGTTGCTTACCAGCGAA 380845
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| ||||| ||||| | || | || ||||||||| |||||| |||| | |||
Sbjct 380846 AATCAAACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGTCTT-AACGT 380904
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| || || || || | |||||||| || || || || || || |
Sbjct 380905 TGTCGATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGA 380964
Query 46581 CAAAGATTTGCAT 46593
| |||||||||||
Sbjct 380965 CGAAGATTTGCAT 380977
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || || || | |||| || | |||||| || |||||
Sbjct 380558 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCTGCCGTCTTCCAACTGCTTACCAGCGAA 380617
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | || || ||||| | || | || ||||||||| |||||| |||||| |||
Sbjct 380618 GATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGTCTTGA-CGT 380676
Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | ||||| || || || || | |||||||| ||||| ||||| || || |
Sbjct 380677 TGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTGA 380736
Query 46581 CAAAGATTTGCAT 46593
|||||||||||||
Sbjct 380737 CAAAGATTTGCAT 380749
Score = 105 bits (116), Expect = 8e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
|| |||||||| ||||| || || ||||| || | || ||||| ||||| || |||||
Sbjct 381015 TCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAA 381074
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| ||||| ||||| | || | | ||||||||| |||||| |||| | |
Sbjct 381075 ATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTAACATTA 381134
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | |||||| ||||| || || | |||||||| || || |||| || || ||
Sbjct 381135 TCGATGGTGTCGGAAGATTCAACTTCGAGAGTGATGGTCTTACCAGTCAAGGTCTTGACG 381194
Query 46583 AAGATTTGCAT 46593
|||||||||||
Sbjct 381195 AAGATTTGCAT 381205
Score = 98.7 bits (108), Expect = 1e-15
Identities = 141/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
|| |||||||| ||||| || || ||||| || |||| || || ||||| || |||||
Sbjct 381699 TCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCTTCCAGTTGCTTACCAGCGAAA 381758
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| ||||| ||||| | || | | |||||||| ||||| |||||| |||
Sbjct 381759 ATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTGGTCTTGA-CGTT 381817
Query 46523 GCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| || || || || | |||||||| || || || || || || ||
Sbjct 381818 GTCGATGGTGTCAGAAGACTCGACCTCAAGAGTGATGGTCTTACCAGTAAGGGTCTTTAC 381877
Query 46582 AAAGATTTGCATTTTG 46597
|||||||||||| ||
Sbjct 381878 GAAGATTTGCATTATG 381893
Score = 89.7 bits (98), Expect = 6e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||||||||| |||||||| || ||||| || | || ||||| |||||||| || ||
Sbjct 381470 CTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCCTCGAGTTGCTTGCCAGCAAA 381529
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | || ||||| | || | | ||||||||| |||||| |||||| |
Sbjct 381530 GATGAGTCTTTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTGACATT 381589
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | || || ||||| || || | || || || ||||| |||| || || ||
Sbjct 381590 GTCAATAGTATCAGAAGATTCGACCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTGAC 381649
Query 46582 AAAGATTTGCAT 46593
|||||||||||
Sbjct 381650 GAAGATTTGCAT 381661
>seq90
Length=207308
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||||||||| ||||| || || ||||| || |||| || || ||||| || || ||
Sbjct 159098 CTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCCTCAAGTTGCTTACCAGCAAA 159157
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| || || || || | || | | ||||||||| |||||| |||||| |
Sbjct 159158 GATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATT 159217
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| || || || || | |||||||| || || || || || || ||
Sbjct 159218 GTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGAC 159277
Query 46582 AAAGATTTGCAT 46593
|| ||||||||
Sbjct 159278 GAAAATTTGCAT 159289
>seq111
Length=751517
Score = 82.4 bits (90), Expect = 9e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||| ||||| | || || || | ||| |||||||||||| |||||||| ||
Sbjct 299256 CCACCTCTCAAACGGAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 299197
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || | | || ||||| ||||| || ||||| || | || || || || | ||
Sbjct 299196 AGGGTTCTGCCATCTTCGAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGGGGA 299137
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| | ||||||||| |||||| |||||| | | | |||||| || || ||
Sbjct 299136 ATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCGGAAGACTCGACC 299077
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAA 46584
|| | |||||||| || || || || || || || ||
Sbjct 299076 TCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAA 299039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565237227130320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |