Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq32 129 6e-25
seq111 107 2e-18
seq90 95.1 1e-14
>seq32
Length=396137
Score = 129 bits (142), Expect = 6e-25
Identities = 168/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || || || ||||| ||||||||| |||| |||||| | |
Sbjct 380749 ATGCAAATCTTTGTCAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCT 380690
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | | |||| | |||| || |||| ||||| ||||| |||||| | ||||
Sbjct 380689 GACACCATCGACAACG--TCAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACC 380632
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
|||| || || || | ||| || || ||| |||| |||| | |||||| |||||||
Sbjct 380631 AACAACGTCTTATCTTCGCTGGTAAGCAGTTGGAAGACGGCAGAACCCTCTCTGACTACA 380572
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||| ||||| | || || || ||||| || ||| | | |||||
Sbjct 380571 ACATCCAGAAGGAGTCCACCCTCCACTTGGTCCTCCGTCTCCGTGGCGG 380523
Score = 129 bits (142), Expect = 6e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| || || ||||||||| | || |||||| | ||
Sbjct 380977 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAGTCTTCC 380918
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| |||| || |||| ||||| ||||| |||||| | |||||
Sbjct 380917 GACACCATCGACAACG-TTAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCA 380859
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| | |||| ||| || || || || || || | | ||||| |||||||||
Sbjct 380858 ACAGCGTTTGATTTTCGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTTCCGACTACAA 380799
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||||||||| | || || || || || || ||| || | || ||
Sbjct 380798 CATCCAAAAGGAGTCCACTCTCCACTTAGTCCTTCGTCTGCGTGGTGG 380751
Score = 111 bits (122), Expect = 2e-19
Identities = 158/219 (72%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
||||||||| |||||||| || || || || || |||||||| | || |||||| | |
Sbjct 381890 AATGCAAATCTTCGTAAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTCGAGTCTTC 381831
Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
|||| | | | |||| | |||| || || | ||||| || || ||||| | |||
Sbjct 381830 TGACACCATCGACAACG--TCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGAC 381773
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|||||||| | |||| ||| || || || ||||| |||| || || || || |||
Sbjct 381772 CAACAGCGTTTGATTTTCGCTGGTAAGCAACTGGAAGACGGTCGTACTCTTTCTGATTAC 381713
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||||||||| ||| | || || || ||||| || |||
Sbjct 381712 AACATCCAAAAAGAATCCACTCTCCACTTGGTCCTCCGT 381674
Score = 102 bits (112), Expect = 8e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || | || || || |||||||| |||| || || | ||
Sbjct 381205 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAAGTTGAATCTTCC 381146
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | |||| || |||| ||||| ||||| |||||| | ||||||
Sbjct 381145 GACACCATCGATAATGTTAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAA 381086
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | |||| ||| || || || || || || | || || || || ||||||
Sbjct 381085 CAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTTTCTGATTACAAC 381026
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||||| ||| | || || || ||||| || |||
Sbjct 381025 ATCCAAAAAGAATCCACTCTCCACTTGGTCCTCCGT 380990
>seq111
Length=751517
Score = 107 bits (118), Expect = 2e-18
Identities = 158/220 (72%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || || || || ||||||||| |||| |||||| | |||||| | |
Sbjct 299039 TTCGTCAAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCATT 299098
Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370
| || | | |||| || |||| ||||| || ||||||||| | || ||||| || |
Sbjct 299099 GACAATG--TCAAGACCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAACAACGTC 299156
Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430
| || | ||| || || || || || || | | ||||| ||||||||||||||||
Sbjct 299157 TTATCTTCGCTGGTAAGCAACTCGAAGATGGCAGAACCCTTTCTGACTACAACATCCAAA 299216
Query 38431 AGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||| | || || || | || || ||||||||||| ||
Sbjct 299217 AGGAGTCTACTCTTCACCTTGTCCTCCGTTTGAGAGGTGG 299256
>seq90
Length=207308
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || || || ||||||||| |||| || ||| | ||
Sbjct 159289 ATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTCC 159230
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | | || | | |||| || |||| ||||| |||||||||||| | || |
Sbjct 159229 GACACCATCGACAATG--TCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATC 159172
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
|||| || | || | || || || || || || |||| || || || || ||||
Sbjct 159171 AACAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACTCTTTCTGATTACA 159112
Query 38422 ACATCCAAAAGGA 38434
|||||||||||||
Sbjct 159111 ACATCCAAAAGGA 159099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500171762141440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |