Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq32 129 6e-25 seq111 107 2e-18 seq90 95.1 1e-14 >seq32 Length=396137 Score = 129 bits (142), Expect = 6e-25 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| ||||||||| |||| |||||| | | Sbjct 380749 ATGCAAATCTTTGTCAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCT 380690 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | |||| || |||| ||||| ||||| |||||| | |||| Sbjct 380689 GACACCATCGACAACG--TCAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACC 380632 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || || || | ||| || || ||| |||| |||| | |||||| ||||||| Sbjct 380631 AACAACGTCTTATCTTCGCTGGTAAGCAGTTGGAAGACGGCAGAACCCTCTCTGACTACA 380572 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | || || || ||||| || ||| | | ||||| Sbjct 380571 ACATCCAGAAGGAGTCCACCCTCCACTTGGTCCTCCGTCTCCGTGGCGG 380523 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||||||| | || |||||| | || Sbjct 380977 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAGTCTTCC 380918 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| |||| || |||| ||||| ||||| |||||| | ||||| Sbjct 380917 GACACCATCGACAACG-TTAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCA 380859 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | |||| ||| || || || || || || | | ||||| ||||||||| Sbjct 380858 ACAGCGTTTGATTTTCGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTTCCGACTACAA 380799 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || || || || || ||| || | || || Sbjct 380798 CATCCAAAAGGAGTCCACTCTCCACTTAGTCCTTCGTCTGCGTGGTGG 380751 Score = 111 bits (122), Expect = 2e-19 Identities = 158/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| |||||||| || || || || || |||||||| | || |||||| | | Sbjct 381890 AATGCAAATCTTCGTAAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTCGAGTCTTC 381831 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||| | | | |||| | |||| || || | ||||| || || ||||| | ||| Sbjct 381830 TGACACCATCGACAACG--TCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGAC 381773 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||||| | |||| ||| || || || ||||| |||| || || || || ||| Sbjct 381772 CAACAGCGTTTGATTTTCGCTGGTAAGCAACTGGAAGACGGTCGTACTCTTTCTGATTAC 381713 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| ||| | || || || ||||| || ||| Sbjct 381712 AACATCCAAAAAGAATCCACTCTCCACTTGGTCCTCCGT 381674 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || |||||||| |||| || || | || Sbjct 381205 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAAGTTGAATCTTCC 381146 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| || |||| ||||| ||||| |||||| | |||||| Sbjct 381145 GACACCATCGATAATGTTAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAA 381086 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| || || || || || || | || || || || |||||| Sbjct 381085 CAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTTTCTGATTACAAC 381026 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| ||| | || || || ||||| || ||| Sbjct 381025 ATCCAAAAAGAATCCACTCTCCACTTGGTCCTCCGT 380990 >seq111 Length=751517 Score = 107 bits (118), Expect = 2e-18 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || || || || ||||||||| |||| |||||| | |||||| | | Sbjct 299039 TTCGTCAAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCATT 299098 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | || | | |||| || |||| ||||| || ||||||||| | || ||||| || | Sbjct 299099 GACAATG--TCAAGACCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAACAACGTC 299156 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | ||| || || || || || || | | ||||| |||||||||||||||| Sbjct 299157 TTATCTTCGCTGGTAAGCAACTCGAAGATGGCAGAACCCTTTCTGACTACAACATCCAAA 299216 Query 38431 AGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| | || || || | || || ||||||||||| || Sbjct 299217 AGGAGTCTACTCTTCACCTTGTCCTCCGTTTGAGAGGTGG 299256 >seq90 Length=207308 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || ||||||||| |||| || ||| | || Sbjct 159289 ATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTCC 159230 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || |||| ||||| |||||||||||| | || | Sbjct 159229 GACACCATCGACAATG--TCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATC 159172 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || | || | || || || || || || |||| || || || || |||| Sbjct 159171 AACAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACTCTTTCTGATTACA 159112 Query 38422 ACATCCAAAAGGA 38434 ||||||||||||| Sbjct 159111 ACATCCAAAAGGA 159099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171762141440