Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq166 159 1e-33 seq32 111 6e-19 seq111 107 8e-18 seq90 98.7 4e-15 seq104 93.3 2e-13 seq82 93.3 2e-13 >seq166 Length=544740 Score = 159 bits (176), Expect = 1e-33 Identities = 517/790 (65%), Gaps = 27/790 (3%) Strand=Plus/Plus Query 450918 TTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTG--TTTACCAAAATGGAAATGT 450975 |||| |||||| | || || |||| || ||||||| ||| |||| || | || Sbjct 457724 TTGGTATTGATTTGGGTACTACCTACTCCTGTGTAGCCCACTTTTCCAA--TGATAGAGT 457781 Query 450976 AGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGA 451035 |||||||| || ||||||||||| |||| |||||||| | || ||| || || Sbjct 457782 TGAAATTATTGCCAATGACCAAGGTAATAGAACCACTCCTTCTTTCGTTGCTTTCACTGA 457841 Query 451036 TTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAA--TGCCAAAA 451091 ||| || | | | || | |||||||| ||||| | | | || |||||| Sbjct 457842 TTCCGAGCGTTTAATTGGTGATGCTGCTAAGAATCAA-GCTGCCATGAACCCTGCCAA-- 457898 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 ||| || | |||||| || ||||| ||||| | | ||| |||| | || |||| Sbjct 457899 -CACTGTTTTTGATGCCAAGCGTTTGATTGGTAGAAAGTACACTGATCCTGAGGTTCAAA 457957 Query 451152 AAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAG 451211 || | || ||| | | | || || | | || ||||| | ||||||| Sbjct 457958 GTGATATTAAGCACTTCCCCTTCAAGGTTGTTGACAAGGCCGGCAAGCCTCAAATTCAAG 458017 Query 451212 TAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTA 451271 | | | || ||||| || ||| ||||||||||||| || |||||||| || | Sbjct 458018 TCGAGTTCAAGGGTGAGGAGAAGGTTTTCACTCCTGAAGAAATCTCTTCTATGGTCCTCA 458077 Query 451272 CTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTA 451331 | || ||||| || || || || | | ||| | | |||| |||| || |||| Sbjct 458078 CCAAGATGAAGGAGACTGCTGAGGGTTTCTTGGGTGGTACTGTTAGCAATGCTGTCATTA 458137 Query 451332 CTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTG 451391 |||| || ||||| |||||||| | ||||| ||||| || || ||||| || | ||| | Sbjct 458138 CTGTCCCTGCTTACTTCAATGACTCTCAACGTCAAGCTACCAAGGATGCCGGTCTTATCG 458197 Query 451392 CTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGAC 451451 ||||| | |||||||| || || || || || ||||| || ||||| | || || || Sbjct 458198 CTGGTCTTAATGTTCTCCGTATCATCAACGAGCCTACTGCTGCTGCCATTGCTTACGG-T 458256 Query 451452 TAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGA 451510 | ||| | | ||| | | || || || | || | || ||||| ||||| || Sbjct 458257 TTGGACA---AGAAGTCTGAGGCTGAGAAGAACGTCTTGATTTTCGATTTGGGTGGTGGT 458313 Query 451511 ACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAAT 451570 ||| ||| || | | | ||||||||||| | || || || ||||| || | Sbjct 458314 ACTTTCGATGTCTCCCTCTTGACTATTGAAGATGGTATCTTCGAGGTTAAGGCTACTGCT 458373 Query 451571 GGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGA----ATGGTTGAA 451626 ||||| ||||| | || ||||||||| | ||| | |||| | | |||| Sbjct 458374 GGTGACACTCACTTGGGTGGTGAAGATTTCGATCACCGTCTTGTCAACCACTTCGTTG-- 458431 Query 451627 AACTGATGTTCAACGAAAACTAAAAGTA-GATATTTCTACTAACCAAAAAGCACTTAGAC 451685 |||| ||||| ||| | ||| | ||| ||||||| ||||||| ||| ||||||| Sbjct 458432 --CTGA-ATTCAAGAGAAAGAACAAGAAGGATCTTTCTACCAACCAAAGAGCCCTTAGAC 458488 Query 451686 GTCTTAAAAC 451695 || | | ||| Sbjct 458489 GTTTGAGAAC 458498 >seq32 Length=396137 Score = 111 bits (122), Expect = 6e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || |||||||| || || || ||||| || || || || Sbjct 380977 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAGTCTTCC 380918 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || |||| || || ||||| ||||| || ||||| || || ||| Sbjct 380917 GACACCATCGACAACGTTAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 380858 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| |||||| | || || |||||||| ||||||||||| | | || || || Sbjct 380857 CAGCGTTTGATTTTCGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTTCCGACTACAAC 380798 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || |||||||| Sbjct 380797 ATCCAAAAGGAGTCCACTCTCCACTTAGT 380769 >seq111 Length=751517 Score = 107 bits (118), Expect = 8e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 391052 GAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGA 391111 ||| | |||||| || || || |||||||| || || || || || || || || || || Sbjct 299032 GAACAGTTTCGTCAAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGA 299091 Query 391112 TAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACA 391171 | |||||| | | || || || || || |||||||||||||| || |||||||| Sbjct 299092 CACCATTGACAATGTCAAGACCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAACA 299151 Query 391172 ACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATAT 391231 |||| | || ||| | || || ||||| |||||||| ||||| | | || || || || Sbjct 299152 ACGTCTTATCTTCGCTGGTAAGCAACTCGAAGATGGCAGAACCCTTTCTGACTACAACAT 299211 Query 391232 TGATAAGGATGCAACACTTCAC 391253 | ||||| | || |||||| Sbjct 299212 CCAAAAGGAGTCTACTCTTCAC 299233 >seq90 Length=207308 Score = 98.7 bits (108), Expect = 4e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || ||||| || || || || || ||||| || || Sbjct 159289 ATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTCC 159230 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || || || ||||| ||||| |||||||| || |||||| Sbjct 159229 GACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAA 159170 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| || || | || || |||||||| || || | ||| | | ||||| || Sbjct 159169 CAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACTCTTTCTGATTACAAC 159110 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || || ||| Sbjct 159109 ATCCAAAAGGAGTCTACTCTCCAC 159086 >seq104 Length=94482 Score = 93.3 bits (102), Expect = 2e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 412279 ACACCCTTTTTTCCAAAACGACCACTTCTACCAATTCTATGTATAAAAGTTTCATGATTT 412338 ||||| ||| | ||||| | || ||||||||||||||| || | ||||| || | Sbjct 8444 ACACCTTTTCTGCCAAATCTTCCTGATCTACCAATTCTATGGATGTAGTTTTCACGACTA 8385 Query 412339 TTAGGTAAATCATAATTTATAACTAATTTAACCTCAGGAATATCTATCCCCCGTGCTAAT 412398 || |||||||||||||||||||| | | |||| | | ||| || || | || | Sbjct 8384 TTTGGTAAATCATAATTTATAACGAGTGATACCTGTTGTACATCGATACCTCTAGCCCAG 8325 Query 412399 AAATCAGTTGTTAATAAAATTCGTGTTTTTCCCTCTCTAAATTCATCTACAATTTTACTT 412458 | |||||| | | ||| | ||| | ||||||| || ||||| | | ||||| | || Sbjct 8324 ACATCAGTCGAAATTAATACTCGAGAGTTTCCCTGTCGGAATTCTTGCATAATTTCATTT 8265 Query 412459 CTTTCTTCTTGTTC 412472 |||| || |||||| Sbjct 8264 CTTTGTTTTTGTTC 8251 >seq82 Length=262920 Score = 93.3 bits (102), Expect = 2e-13 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 420808 GTAAATACAACAGTTTTTGTAGGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAAC 420867 || ||||| ||||| || | ||||||||| | ||||| || ||||| || ||||| || Sbjct 143204 GTGAATACGACAGTCTTGGCAGGCATATTAAGACCAATGGAGAAAGTCTCTGTTGCAAAT 143263 Query 420868 AAAACTTTAATTA-AtttttttGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAAT 420926 | ||||| || | | || ||| | ||||||| |||| || ||||||||||| || | Sbjct 143264 AGCACTTTGATAAGACCTTCTTGGA-AAAGAATCTCAATAACCTCTTTTAAAATTGGCAA 143322 Query 420927 TATACCAGAATGATG 420941 || |||||||||||| Sbjct 143323 TAAACCAGAATGATG 143337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975714197893928