Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq78 120 4e-22 seq155 118 1e-21 seq43 89.7 6e-13 >seq78 Length=1347436 Score = 120 bits (132), Expect = 4e-22 Identities = 342/510 (67%), Gaps = 23/510 (5%) Strand=Plus/Minus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGG-AAGAC--TCTAAAT 101873 ||||||||||||||| | ||||| ||||||| | || ||| || || ||| ||| Sbjct 285067 TGGACTGCTGAAGAGATTGATCTTGGAAAGGATATTAGTGACTGGGAACACCGTCTTAAT 285008 Query 101874 GAAAATGAAAAGAAATTCATAAAATACA---TCCTGGCATTCTTTGCTGGGTCCGATGGA 101930 || |||| || |||| | | | | || || |||||||||| |||||||| Sbjct 285007 GATGATGA---GAGATTCTTTATCTCTCGTGTGCTCGCTTTCTTTGCTGCCTCCGATGGT 284951 Query 101931 ATTGTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAG 101989 ||||| |||||| | | | | || ||| |||||| || || | |||| || | Sbjct 284950 ATTGTCAATGAGAACCTTGTTGAGAGATTCTCTGGTGAGGTCCAGATTC-CTGAGGCCAA 284892 Query 101990 ATCTTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAAC 102048 | |||||| | | ||| |||| ||| | | | |||| ||||| ||| || Sbjct 284891 GTGTTTCTACGGATTCCAAA-TCATGATGGAGAATATCCATGCTGAGACTTACTCCTTAC 284833 Query 102049 TCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCA-A 102107 | || || | ||||| ||||||| | ||| || | || | || || | | Sbjct 284832 TTATTGATACTTATATCAAGGATGCTAAGGAGGCTAACTTCTTGTTCCATGCTATTGATA 284773 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAAG 102164 ||| |||| |||||| | ||||| || || ||||| | | ||| | |||| | Sbjct 284772 ACA-TTCCTTGTATTAAGAAGAAGGCTGACTGGGCCCTAACTTGGATCTCTGATGATCAA 284714 Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 || | ||||||||||||| ||| | || || || ||| |||||||||||||||||| Sbjct 284713 TC---TACCTTTGCTGAGCGTCTCGTTGCTTTCGCTGCTGTCGAGGGTATCTTCTTCTCT 284657 Query 102225 GGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 ||||| || ||| ||| | |||| | |||||||| ||||| ||||| ||| | || Sbjct 284656 GGTTCATT-TGCTAGTATCTTTTGGTTGAAGAAGCGTGGTCTTATGCCTGGTTTGACTTT 284598 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| || ||| | || |||||||| || || Sbjct 284597 CTCTAATGAGTTGATTTCTCGTGATGAAGG 284568 >seq155 Length=566151 Score = 118 bits (130), Expect = 1e-21 Identities = 849/1355 (63%), Gaps = 51/1355 (4%) Strand=Plus/Plus Query 112008 TATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGT 112067 ||| | || || ||||| | ||||| | | ||| | || ||||| ||||| || Sbjct 482428 TATTTAGAACCTTGGCATGGTGATATATTCCAATTCTTAGACTTGCGGAAAAACCATGGC 482487 Query 112068 GATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATG 112127 | |||||| | | || ||||| || | |||||||||||| || ||| | || ||| Sbjct 482488 AAAGAGGAGCTGAGAGCTCGAGATCTATTTTACGCTCTCTGGATCCCGGATTTGTTTATG 482547 Query 112128 AAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTC 112187 |||| ||| | || | || | |||| ||| |||| | ||| ||||||| || | Sbjct 482548 AAGAAAGTCCACGATAATGAAGAATGGTGTCTTTTTTCTAATGACCAGGCACCTGGCTTG 482607 Query 112188 TCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGG 112247 | |||| || || || |||||||| | |||| || ||| | |||| ||| Sbjct 482608 GCAGATGTTTATGGAGATGAATTTGAAGCGTTATACAATCGATATGAGAAGGAAAATCGA 482667 Query 112248 GCGACTGCG-ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCG 112305 | | |||| | || ||| | || | | ||| || || || | | || | || Sbjct 482668 -CAATTGCGCAAAGTTAAAGCC-CAGAAGCTTTGGTTTGCGATACTAGAAGCACAGATCG 482725 Query 112306 AGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGA 112365 ||||||||| |||| |||||| || ||||| || || |||| ||| || || || | Sbjct 482726 AGACTGGTAATCCATTTATGCTATATAAAGATGCATGCAACCGGAAGTCAAACCAGAATA 482785 Query 112366 ATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 112425 || | || || || || || | ||||| ||||| | ||| | | | Sbjct 482786 ATCTTGGCACAATTAAATCGTCAAATTTGTGTACCGAAATAGTACAATATTCGTCTCCTG 482845 Query 112426 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA-- 112483 ||||||| ||||| ||||| ||||| || || || | || | || ||| | || Sbjct 482846 ATGAGACCGCTGTTTGTAATCTCGCCTCTATAGCGTTACCAACGTTTGTACACTACGACG 482905 Query 112484 --GACAA-----AGACATT---TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCA 112533 ||| | || || ||| | |||||| || || |||||| | ||| ||| Sbjct 482906 AGGACGATGTTGAGGTATGGTATGACTTTGAAAAGCTTCATGAAGTTGCCAAAGTAGTCG 482965 Query 112534 CAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAAT 112593 | | ||| || |||| | || || | ||| || ||||| || |||| | | | Sbjct 482966 CTAGAAATCTGAACAAGATCATAGACATCAATGACTATCCCGTCGAATCTGCGAGGAGGT 483025 Query 112594 CTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATG--TAT-TCA 112650 ||||| ||| |||| | || || | | |||| |||||||| | || ||| ||| | | Sbjct 483026 CTAATGTGAAACACAGACCCATAGCTGTCGGAGTCCAAGGATTGGCAGATACTTATATGA 483085 Query 112651 TTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTG 112710 || || | ||||||| || ||||| | | | |||| || ||||||| Sbjct 483086 AACTGCGTATGC---CATTTGACTCGTCTGAAGCCAGATTACTTAATGTGCAAATATTTG 483142 Query 112711 AGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCAT 112770 | || || ||||| || || | ||||| | |||| | || | | | || |||| Sbjct 483143 AAACTATATATCATGCGGCAGTCGAGGCATCTATGGAGCTAGCCAAAGAAAACGGACCAT 483202 Query 112771 ATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAG 112830 | || | | | ||||||||| ||||| | ||| || | ||||| ||| |||||| Sbjct 483203 ACGATAGTTATTCGGGTTCTCCCGCTTCGAAGGGGATGTTGCAATTCGATTTGTGGG--- 483259 Query 112831 GTGAGACCAAGCTTCACTACGAC-------TGGGAC-----GCTCTCAAGGAACGC-ATC 112877 ||||| | | |||| |||| |||||| | || || | | || Sbjct 483260 GTGAGCCTGAT-TTCAAGGCGACGGATTTATGGGACTGGGAGAGCTTAAAGCGTGATATT 483318 Query 112878 AAGGAGAAGGGTCTTCGTAACAGTCTTTTGATG--GCACCAATGCCAACAGCCTCCACCG 112935 ||| || ||| | || ||||| | || ||||||||||| || || || || Sbjct 483319 TCCGAGTTTGGACTTAGGAAT--TCTTTAGTTGTCGCACCAATGCCCACCGCTTCGACTT 483376 Query 112936 CACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAA 112995 | ||||| | ||| || || || |||||||| ||| | || || ||| || Sbjct 483377 CGCAAATTCTTGGTTTCAACGAGTGTTTTGAACCAATCACATCAAATATATATACTCGAC 483436 Query 112996 GAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGT---GGATG-ACCTCAAA 113051 | ||| | || || || |||||||| | |||| || |||| | | ||| Sbjct 483437 GGGTCCTTTCTGGCGAATTCCAAATTGTCAATGAATATCTTGTAAGGGATCTAGCCCAAT 483496 Query 113052 GAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATT 113111 || || || || ||||| | | | | || | | | ||| || || Sbjct 483497 TAGGTTTGT----GGAATGCTGATATCAGGCACATGATAATTAGTCAAGATGGCTCTATC 483552 Query 113112 CAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATC 113171 ||||| ||| || ||||||| || | ||| || | || || | |||||| | Sbjct 483553 CAAAACATTAATGAGATTCCAGGCGATTTGAAGGAGATATATAAGACGGCCTGGGAATTG 483612 Query 113172 AAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAA 113231 | ||| | | || || |||||||| || || ||||| | |||||| || |||| Sbjct 483613 AGCCAGAAAGTGATAATCGATATGGCCGCCGACCGCGGTCGATACATTGACCAGTCTCAA 483672 Query 113232 AGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTAC 113291 ||||||||| | |||||| ||| ||| || | ||| || || |||||| | ||| Sbjct 483673 AGTATGAATATTTTCATGAAAAATCCCACTACTGGCAAACTTACTAGTATGCATTTCTAC 483732 Query 113292 AGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTA 113326 | ||||||||||| ||||| || || |||||||| Sbjct 483733 GGCTGGAAGAAGGGACTCAAGACAGGAATGTATTA 483767 >seq43 Length=391780 Score = 89.7 bits (98), Expect = 6e-13 Identities = 218/325 (67%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 16057 TTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTT 16116 |||| | ||||||||||||||||| || || || | || | | ||||| Sbjct 81885 TTCCAATAGCATCAATCTCATCAATAAATACAATACTAGGAGCCTCCTTACGAGCTGTAG 81944 Query 16117 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 |||| ||||| | || || | || || |||||||||||||||||||| || | | | Sbjct 81945 CAAATAGATCTCTCACCCGGCTAGCACCAACACCAACAAACATCTCCACGAATTCCGAGC 82004 Query 16177 CGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 | || ||| || || || ||| | ||||| || ||||| || || | |||| Sbjct 82005 CAGATACA-GAGAAAAATGGTACACCTGCCTCACCAGCTGTGGCTTTAGCAAGTAAAGTC 82063 Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACTTCC 16294 ||||| ||||| || ||| | || | |||||||| || |||||||| || | || | Sbjct 82064 TTACCAGTACCAGGAGGACCAGAAAGAACAGCACCTCGAGGGATCTTGGCACCTAATTTC 82123 Query 16295 AAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGC 16354 |||| | |||| | ||||| ||| |||| ||| | ||| ||||| || | Sbjct 82124 -TCGTATTTAGCAGGCTCTTTAAGGAAACTAACAAACTCCATGATTTCCTCTTTAGCCTC 82182 Query 16355 GTCAATCCCCTCAACATCGGTAAAC 16379 |||| || ||||||||| |||| Sbjct 82183 GTCAGCGCCAGCAACATCGGAAAAC 82207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741111959520