Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq79 147 3e-30 seq43 104 3e-17 seq78 98.7 1e-15 >seq79 Length=299291 Score = 147 bits (162), Expect = 3e-30 Identities = 1104/1761 (63%), Gaps = 65/1761 (4%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || |||||||| || |||||||| | |||| | || | |||||| | Sbjct 119899 CGCAGGTAGTACATACCTGTCTTGAGACCCTTTTGCCATCCATAGAAATGCATACTGGTC 119840 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | ||| | || ||| | ||| | | ||||| || ||| ||||| || || Sbjct 119839 AACTTGCCCATAGTAGGAGCTTGGATATAGATGTTCAAAGATTGACTTTGATCAATATAT 119780 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587 | |||| ||||| ||||| || ||||| |||||| | ||||| ||||||||| Sbjct 119779 GCAGCACGGTCAGCAGCCATATCAATGATTGTCTTTTGAGAGAGCTCCCAAACAGTCTTG 119720 Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCA---CCAGCC 109644 || ||| |||||| ||||| ||||||| ||||||||||||||| ||| | ||| Sbjct 119719 TATAAAGCCTTGATGTCATCAGGAATGTTAGGGATGTTTTGAATAGAACCATTGCTAGCA 119660 Query 109645 TTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGAT-CGTCAAC 109703 | | || | |||||| | || ||| | || | | |||| | ||||| Sbjct 119659 ATGATTCTG---TTCTTCATGTTTTCACCCCACAATCCCAAGTCGACAAGATCCTTCAAC 119603 Query 109704 AA-GATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAG 109762 || || | |||||| | || || |||||||| | || ||||||||| | Sbjct 119602 AACCAT--TGGTTGACAATCTGGAACTCTCCAGCAAGGACTCTACGAGAGTAGATGTTGG 119545 Query 109763 TCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCA 109822 ||||| || || ||||| |||||||| || |||||||| | || ||||| || |||| Sbjct 119544 ATGTGTAAGGCTCAAAACATTCATTGTTACCGAGGATTTGGGAGGTCGAAGCAGTAGGCA 119485 Query 109823 TGGGAGCCATGAGAAGACTGTTTCGGAGACC---CTTCGTCTTTACCCGCTCACGCATTG 109879 | ||||| | ||||||| ||||| ||||| ||| | | | | || | | | | Sbjct 119484 TAGGAGCAACGAGAAGAGAGTTTCTAAGACCGTGCTTAGCCATCTTCTTCTTAAGAGTAG 119425 Query 109880 CGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTA 109939 ||||||| | || || | ||| | |||||||||| || ||| | | Sbjct 119424 ---CCCAATCCCATAGATCAGT---GGGAGT---AACATCCCACATGTCGTATTGTAAAA 119374 Query 109940 CACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACT 109999 ||||| || ||||||||| |||| | ||||||| | || | ||| || | | Sbjct 119373 GACCCTTAGAAGCAGGAGATCCCTCATAGGTCTCGTAGGCGCCATATTTCTCAGCAAGTT 119314 Query 110000 CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGC 110059 | ||||| |||| || ||||| || || || ||| | || ||| |||| | Sbjct 119313 CAATTGAAGATTCTACAGCAGCATGGTAAATGGTTTCAGAGATTTGAATGTTCAATTGCT 119254 Query 110060 GAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAA 110119 | || | ||||||| || | || | || || |||| |||| ||| |||| Sbjct 119253 TGGCTTCAGGAGAGTCGAATGGCAAACGGAGAGCCATGAAAGCATCAGCTAAACCTTGAA 119194 Query 110120 CACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTC---TACGGGGT 110176 || ||| |||| || | || | |||| | || ||| || ||| || | Sbjct 119193 TGCCAAGAGCAATAGGTCTGTGACGGAAGTTA---CTTCTCTCAGCCTCCTTTACTGGAT 119137 Query 110177 AAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGA 110236 | ||||| | ||| || | ||| | || | || || | ||| | | ||| |||| Sbjct 119136 AGAAGTTTCTGTCAATAATGACATTCAAGTTTCTAGTAACGGCCTTGGCAACTTCGTGGA 119077 Query 110237 GTTTGTCGTAATCGAAC-----GTTTTCGTC-TCCTTATTGACATATTTGGGGAGAGCAA 110290 | || || | | | || | ||| || || | | ||| | || || | | Sbjct 119076 GCTTCTCAAAGTTGTACCATAAGCCTTCATCATCACTTTCAACAAAAGCAGGAAGGGACA 119017 Query 110291 TAGACGCAAGATTGCACACAGAAGTCTCGTCTT-TGTCG--GTGTATTCCAAAATTTCCG 110347 ||| || | || || || || | | |||| | | | ||| || | |||||| Sbjct 119016 AAGAAGCCAAGTTACAAAC---AGCCACTTCTTCAGGAGAAGAGTACTCGACAATTTCAC 118960 Query 110348 TACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATG 110407 |||||||||||| || || ||||| ||| | ||||| ||| ||| || | Sbjct 118959 AGCACAAGTTGGAAGATTTGATAGTACCCAGGTTTTGTTGATTACTCTTGCTGTTACAAG 118900 Query 110408 CATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCC 110467 ||||||| ||||||||| | ||| ||||||| || || || | || || || || | || Sbjct 118899 CATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTTTGGGCCTCAAGGATAGCATACC 118840 Query 110468 ATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTAC 110526 | | | || | || || |||| || | ||||| | || ||||| || Sbjct 118839 AGAGCTTCTG-AGCCTTGATAGTTCTTCTACCTTTGCCTTCTTTTTCATACTTTTCATAG 118781 Query 110527 AAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAG 110586 | | | ||||||| | ||| || || || | ||| || | || || | Sbjct 118780 AGGGCAACAAATTCGTCTCCATAGACCTCGTCCAAACCAGGACACTCATTAGGGCACATC 118721 Query 110587 AGGGACCAATTTCCACCCT--CCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCG 110644 | | |||| ||| | | ||| || ||||||||||||| ||| || ||||| | | Sbjct 118720 AAAGTCCAA--TCCTCGTTAGCCTTGACTCTCTTCATGAACAAGTCGGGGATCCAAAGGG 118663 Query 110645 CCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAA 110704 || |||| | || | | ||| | ||||| | ||| ||||| || | || | | Sbjct 118662 CCAAGAACAAATCTCTGGCACGGACTTCTTCCTTACCGTGGTTCTTTCGCAAGTCGATGA 118603 Query 110705 AGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA-------TGGATCCCTTA 110757 | || | | ||| |||||| || || | || | |||| ||| || ||| Sbjct 118602 ATTCAAAAACATCGTCGTGCCAAGGCTCCAAGTACATGGCGAAAGCACCTGG-TCTCTTG 118544 Query 110758 CGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATA 110817 || || | |||| |||||| | || ||| ||||| || || | |||||| | | Sbjct 118543 TTACCAC---CTTGGTCAACATATCTAGCAGTGTTGTTGAAAACTCTCAACATAGGGACA 118487 Query 110818 ATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGG 110877 || || | || ||| || ||||| ||| ||| | ||||||| || | |||| Sbjct 118486 ATACCGTTAGAAGTACCGTTAGTACCGGCAATATAGGAACCAGTGGCACGGATATTGTGG 118427 Query 110878 ATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACC 110936 ||| || |||||||||||| || |||| || ||||| ||| | | ||| | Sbjct 118426 ATACTCAAACCAATACCACCTGCAGACTTCGAGATCAAGGCACAGGTCT-TCAAAGTATC 118368 Query 110937 ATAAATACCATCAATCGAATCTGCCT---TGTTGGCAATTAGAAAGCAAGAAGACATCTG 110993 ||| ||||| ||||| || || ||| |||| | | ||||| ||||| ||||| || Sbjct 118367 ATAGATACCCTCAATGGAGTCATCCTTCATGTTTACCA--AGAAA-CAAGACGACATTTG 118311 Query 110994 AGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGA 111053 || || || || |||||| | | ||||| | |||||| | || ||| || Sbjct 118310 TGGCTTGGGAGTACCAGCATTGTACAAAGTAGGAGAAGCATGAGTAAAGTACTTTTGTGA 118251 Query 111054 CATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAAC 111113 ||| | ||||| || || | || || | || || || ||||||| || || Sbjct 118250 CATGTAATTGTAAGTTTCAATGGCCTTGGCAATGTCCGCGCCATGGATACCAACAGCTAC 118191 Query 111114 TCGCATGAACATATATTGAGG 111134 || ||||| ||||| |||||| Sbjct 118190 TCTCATGATCATATGTTGAGG 118170 >seq43 Length=391780 Score = 104 bits (114), Expect = 3e-17 Identities = 169/237 (71%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 11672 TCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCT 11731 |||| || | ||| ||||||||||| || ||||| |||| || | ||| || | Sbjct 81883 TCTT-CCAATAGCATCAATCTCATCAATAAATACAATACTAGGAGCCTCCTTACGAGC-T 81940 Query 11732 GTTCGAAA-AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTT 11790 || ||| || || | || || | || |||||||| || |||||||| ||||| | Sbjct 81941 GTAGCAAATAGATCTCTCACCCGGCTAGCACCAACACCAACAAACATCTCCACGAATTCC 82000 Query 11791 GCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAG 11849 | | |||| ||| ||| || || ||| | ||||||||| ||||| ||| || | Sbjct 82001 GAGCCAGATACAGAGAAA-AATGGTACACCTGCCTCACCAGCTGTGGCTTTAGCAAGTAA 82059 Query 11850 AGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 ||||||||| |||||||| | ||||| |||| || || || |||||||||||||| Sbjct 82060 AGTCTTACCAGTACCAGGAGGACCAGAAAGAACAGCACCTCGAGGGATCTTGGCACC 82116 >seq78 Length=1347436 Score = 98.7 bits (108), Expect = 1e-15 Identities = 204/296 (69%), Gaps = 21/296 (7%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAG--CAAAGTCCAGGCATGAGTCCTCTTT 119571 |||||||| ||||| || | ||||||| ||| |||| |||||||| || || | | Sbjct 284568 CCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAAA--CCAGGCATAAGACCACGCT 284625 Query 119572 TCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGA 119631 |||| | ||||||||| | ||| ||||| |||||||| ||||| ||| |||| Sbjct 284626 TCTTCAACCAAAAGATACTAGCAAATGAACCAGAGAAGAAGATACCCTCGACAGCAGCGA 284685 Query 119632 AAGCGAATAGACGCTCAGCAAAAGGTCGA--GACTTGTC---GAACCACTTGAGAGCCCA 119686 |||| | ||||||||||| |||||| || || | || || ||| | || ||||| Sbjct 284686 AAGCAACGAGACGCTCAGC-AAAGGTAGATTGA-TCATCAGAGATCCAAGTTAGGGCCCA 284743 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAA----AAGTT-GCTTC 119741 || ||||| || || || || | | | || || | ||| ||||| || || Sbjct 284744 GTCAGCCTTCTTCTTAATACAAGGAATGTTATCAATAGCATGGAACAAGAAGTTAGCCTC 284803 Query 119742 TTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATG 119797 || | ||||||| ||||| ||||||| ||| ||||| |||||| |||| Sbjct 284804 CTT-----AGCATCCTTGATATAAGTATCAATAAGTAAGGAGTAAGTCTCAGCATG 284854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974777874800