Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq79 147 3e-30
seq43 104 3e-17
seq78 98.7 1e-15
>seq79
Length=299291
Score = 147 bits (162), Expect = 3e-30
Identities = 1104/1761 (63%), Gaps = 65/1761 (4%)
Strand=Plus/Minus
Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467
|| || || |||||||| || |||||||| | |||| | || | |||||| |
Sbjct 119899 CGCAGGTAGTACATACCTGTCTTGAGACCCTTTTGCCATCCATAGAAATGCATACTGGTC 119840
Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527
| ||| | || ||| | ||| | | ||||| || ||| ||||| || ||
Sbjct 119839 AACTTGCCCATAGTAGGAGCTTGGATATAGATGTTCAAAGATTGACTTTGATCAATATAT 119780
Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587
| |||| ||||| ||||| || ||||| |||||| | ||||| |||||||||
Sbjct 119779 GCAGCACGGTCAGCAGCCATATCAATGATTGTCTTTTGAGAGAGCTCCCAAACAGTCTTG 119720
Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCA---CCAGCC 109644
|| ||| |||||| ||||| ||||||| ||||||||||||||| ||| | |||
Sbjct 119719 TATAAAGCCTTGATGTCATCAGGAATGTTAGGGATGTTTTGAATAGAACCATTGCTAGCA 119660
Query 109645 TTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGAT-CGTCAAC 109703
| | || | |||||| | || ||| | || | | |||| | |||||
Sbjct 119659 ATGATTCTG---TTCTTCATGTTTTCACCCCACAATCCCAAGTCGACAAGATCCTTCAAC 119603
Query 109704 AA-GATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAG 109762
|| || | |||||| | || || |||||||| | || ||||||||| |
Sbjct 119602 AACCAT--TGGTTGACAATCTGGAACTCTCCAGCAAGGACTCTACGAGAGTAGATGTTGG 119545
Query 109763 TCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCA 109822
||||| || || ||||| |||||||| || |||||||| | || ||||| || ||||
Sbjct 119544 ATGTGTAAGGCTCAAAACATTCATTGTTACCGAGGATTTGGGAGGTCGAAGCAGTAGGCA 119485
Query 109823 TGGGAGCCATGAGAAGACTGTTTCGGAGACC---CTTCGTCTTTACCCGCTCACGCATTG 109879
| ||||| | ||||||| ||||| ||||| ||| | | | | || | | | |
Sbjct 119484 TAGGAGCAACGAGAAGAGAGTTTCTAAGACCGTGCTTAGCCATCTTCTTCTTAAGAGTAG 119425
Query 109880 CGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTA 109939
||||||| | || || | ||| | |||||||||| || ||| | |
Sbjct 119424 ---CCCAATCCCATAGATCAGT---GGGAGT---AACATCCCACATGTCGTATTGTAAAA 119374
Query 109940 CACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACT 109999
||||| || ||||||||| |||| | ||||||| | || | ||| || | |
Sbjct 119373 GACCCTTAGAAGCAGGAGATCCCTCATAGGTCTCGTAGGCGCCATATTTCTCAGCAAGTT 119314
Query 110000 CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGC 110059
| ||||| |||| || ||||| || || || ||| | || ||| |||| |
Sbjct 119313 CAATTGAAGATTCTACAGCAGCATGGTAAATGGTTTCAGAGATTTGAATGTTCAATTGCT 119254
Query 110060 GAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAA 110119
| || | ||||||| || | || | || || |||| |||| ||| ||||
Sbjct 119253 TGGCTTCAGGAGAGTCGAATGGCAAACGGAGAGCCATGAAAGCATCAGCTAAACCTTGAA 119194
Query 110120 CACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTC---TACGGGGT 110176
|| ||| |||| || | || | |||| | || ||| || ||| || |
Sbjct 119193 TGCCAAGAGCAATAGGTCTGTGACGGAAGTTA---CTTCTCTCAGCCTCCTTTACTGGAT 119137
Query 110177 AAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGA 110236
| ||||| | ||| || | ||| | || | || || | ||| | | ||| ||||
Sbjct 119136 AGAAGTTTCTGTCAATAATGACATTCAAGTTTCTAGTAACGGCCTTGGCAACTTCGTGGA 119077
Query 110237 GTTTGTCGTAATCGAAC-----GTTTTCGTC-TCCTTATTGACATATTTGGGGAGAGCAA 110290
| || || | | | || | ||| || || | | ||| | || || | |
Sbjct 119076 GCTTCTCAAAGTTGTACCATAAGCCTTCATCATCACTTTCAACAAAAGCAGGAAGGGACA 119017
Query 110291 TAGACGCAAGATTGCACACAGAAGTCTCGTCTT-TGTCG--GTGTATTCCAAAATTTCCG 110347
||| || | || || || || | | |||| | | | ||| || | ||||||
Sbjct 119016 AAGAAGCCAAGTTACAAAC---AGCCACTTCTTCAGGAGAAGAGTACTCGACAATTTCAC 118960
Query 110348 TACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATG 110407
|||||||||||| || || ||||| ||| | ||||| ||| ||| || |
Sbjct 118959 AGCACAAGTTGGAAGATTTGATAGTACCCAGGTTTTGTTGATTACTCTTGCTGTTACAAG 118900
Query 110408 CATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCC 110467
||||||| ||||||||| | ||| ||||||| || || || | || || || || | ||
Sbjct 118899 CATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTTTGGGCCTCAAGGATAGCATACC 118840
Query 110468 ATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTAC 110526
| | | || | || || |||| || | ||||| | || ||||| ||
Sbjct 118839 AGAGCTTCTG-AGCCTTGATAGTTCTTCTACCTTTGCCTTCTTTTTCATACTTTTCATAG 118781
Query 110527 AAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAG 110586
| | | ||||||| | ||| || || || | ||| || | || || |
Sbjct 118780 AGGGCAACAAATTCGTCTCCATAGACCTCGTCCAAACCAGGACACTCATTAGGGCACATC 118721
Query 110587 AGGGACCAATTTCCACCCT--CCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCG 110644
| | |||| ||| | | ||| || ||||||||||||| ||| || ||||| | |
Sbjct 118720 AAAGTCCAA--TCCTCGTTAGCCTTGACTCTCTTCATGAACAAGTCGGGGATCCAAAGGG 118663
Query 110645 CCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAA 110704
|| |||| | || | | ||| | ||||| | ||| ||||| || | || | |
Sbjct 118662 CCAAGAACAAATCTCTGGCACGGACTTCTTCCTTACCGTGGTTCTTTCGCAAGTCGATGA 118603
Query 110705 AGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA-------TGGATCCCTTA 110757
| || | | ||| |||||| || || | || | |||| ||| || |||
Sbjct 118602 ATTCAAAAACATCGTCGTGCCAAGGCTCCAAGTACATGGCGAAAGCACCTGG-TCTCTTG 118544
Query 110758 CGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATA 110817
|| || | |||| |||||| | || ||| ||||| || || | |||||| | |
Sbjct 118543 TTACCAC---CTTGGTCAACATATCTAGCAGTGTTGTTGAAAACTCTCAACATAGGGACA 118487
Query 110818 ATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGG 110877
|| || | || ||| || ||||| ||| ||| | ||||||| || | ||||
Sbjct 118486 ATACCGTTAGAAGTACCGTTAGTACCGGCAATATAGGAACCAGTGGCACGGATATTGTGG 118427
Query 110878 ATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACC 110936
||| || |||||||||||| || |||| || ||||| ||| | | ||| |
Sbjct 118426 ATACTCAAACCAATACCACCTGCAGACTTCGAGATCAAGGCACAGGTCT-TCAAAGTATC 118368
Query 110937 ATAAATACCATCAATCGAATCTGCCT---TGTTGGCAATTAGAAAGCAAGAAGACATCTG 110993
||| ||||| ||||| || || ||| |||| | | ||||| ||||| ||||| ||
Sbjct 118367 ATAGATACCCTCAATGGAGTCATCCTTCATGTTTACCA--AGAAA-CAAGACGACATTTG 118311
Query 110994 AGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGA 111053
|| || || || |||||| | | ||||| | |||||| | || ||| ||
Sbjct 118310 TGGCTTGGGAGTACCAGCATTGTACAAAGTAGGAGAAGCATGAGTAAAGTACTTTTGTGA 118251
Query 111054 CATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAAC 111113
||| | ||||| || || | || || | || || || ||||||| || ||
Sbjct 118250 CATGTAATTGTAAGTTTCAATGGCCTTGGCAATGTCCGCGCCATGGATACCAACAGCTAC 118191
Query 111114 TCGCATGAACATATATTGAGG 111134
|| ||||| ||||| ||||||
Sbjct 118190 TCTCATGATCATATGTTGAGG 118170
>seq43
Length=391780
Score = 104 bits (114), Expect = 3e-17
Identities = 169/237 (71%), Gaps = 5/237 (2%)
Strand=Plus/Plus
Query 11672 TCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCT 11731
|||| || | ||| ||||||||||| || ||||| |||| || | ||| || |
Sbjct 81883 TCTT-CCAATAGCATCAATCTCATCAATAAATACAATACTAGGAGCCTCCTTACGAGC-T 81940
Query 11732 GTTCGAAA-AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTT 11790
|| ||| || || | || || | || |||||||| || |||||||| ||||| |
Sbjct 81941 GTAGCAAATAGATCTCTCACCCGGCTAGCACCAACACCAACAAACATCTCCACGAATTCC 82000
Query 11791 GCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAG 11849
| | |||| ||| ||| || || ||| | ||||||||| ||||| ||| || |
Sbjct 82001 GAGCCAGATACAGAGAAA-AATGGTACACCTGCCTCACCAGCTGTGGCTTTAGCAAGTAA 82059
Query 11850 AGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906
||||||||| |||||||| | ||||| |||| || || || ||||||||||||||
Sbjct 82060 AGTCTTACCAGTACCAGGAGGACCAGAAAGAACAGCACCTCGAGGGATCTTGGCACC 82116
>seq78
Length=1347436
Score = 98.7 bits (108), Expect = 1e-15
Identities = 204/296 (69%), Gaps = 21/296 (7%)
Strand=Plus/Plus
Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAG--CAAAGTCCAGGCATGAGTCCTCTTT 119571
|||||||| ||||| || | ||||||| ||| |||| |||||||| || || | |
Sbjct 284568 CCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAAA--CCAGGCATAAGACCACGCT 284625
Query 119572 TCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGA 119631
|||| | ||||||||| | ||| ||||| |||||||| ||||| ||| ||||
Sbjct 284626 TCTTCAACCAAAAGATACTAGCAAATGAACCAGAGAAGAAGATACCCTCGACAGCAGCGA 284685
Query 119632 AAGCGAATAGACGCTCAGCAAAAGGTCGA--GACTTGTC---GAACCACTTGAGAGCCCA 119686
|||| | ||||||||||| |||||| || || | || || ||| | || |||||
Sbjct 284686 AAGCAACGAGACGCTCAGC-AAAGGTAGATTGA-TCATCAGAGATCCAAGTTAGGGCCCA 284743
Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAA----AAGTT-GCTTC 119741
|| ||||| || || || || | | | || || | ||| ||||| || ||
Sbjct 284744 GTCAGCCTTCTTCTTAATACAAGGAATGTTATCAATAGCATGGAACAAGAAGTTAGCCTC 284803
Query 119742 TTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATG 119797
|| | ||||||| ||||| ||||||| ||| ||||| |||||| ||||
Sbjct 284804 CTT-----AGCATCCTTGATATAAGTATCAATAAGTAAGGAGTAAGTCTCAGCATG 284854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588974777874800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |