Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq79 199 5e-46 seq155 120 4e-22 seq43 95.1 1e-14 seq78 93.3 5e-14 >seq79 Length=299291 Score = 199 bits (220), Expect = 5e-46 Identities = 1116/1757 (64%), Gaps = 61/1757 (3%) Strand=Plus/Minus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 || || |||||||| || |||||||| || | || ||| | || | ||||||| | Sbjct 119899 CGCAGGTAGTACATACCTGTCTTGAGACCCTTTTGCCATCCATAGAAATGCATACTGGTC 119840 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709 | |||| ||| || ||| || || | | |||| | |||||| || ||||| | Sbjct 119839 AACTTGCCCATAGTAGGAGCTTGGATATAGATGTTCAAAGATTGACTTTGATCAATATAT 119780 Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGG 105769 | |||| | || ||||||||||||| ||| || ||||| || || | Sbjct 119779 GCAGCACGGTCAGCAGCCATATCAATGATTGTCTTTTGAGAGAGCTCCCAAACAGTCTTG 119720 Query 105770 TAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCC---CCCGCC 105826 || | | |||||| ||||| || || | | ||| |||||||| ||||| | || Sbjct 119719 TATAAAGCCTTGATGTCATCAGGAATGTTAGGGATGTTTTGAATAGAACCATTGCTAGCA 119660 Query 105827 TTGACCATGAGATCCTTCATATCCTTGGACCA-AAGACCAA-TCTTCTTGAGATCATTGA 105884 ||| || | |||||| | | ||| || |||| || | ||||| || | Sbjct 119659 ATGATTCTG---TTCTTCATGTTTTCACCCCACAATCCCAAGTCGACA--AGATCCTTCA 119605 Query 105885 CGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGATGTTC 105943 | | |||||||||| |||||||| || ||| ||| | ||| |||||||| Sbjct 119604 ACAACCATTGGTTGACAATCTGGAACTCTCCAGCAAGGACTCTACG-AGAGTAGATGTTG 119546 Query 105944 GTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGC 106003 | ||||| || ||||| |||||||| ||||| | |||||| | ||| || || || ||| Sbjct 119545 GATGTGTAAGGCTCAAAACATTCATTGTTACCGAGGATTTGGGAGGTCGAAGCAGTAGGC 119486 Query 106004 ATTGGTGCCATCAAAAGACTGTTACGAAGACC---CTTTTCCTTGATGCGTTCCTTGAGA 106060 || || || | | |||| ||| | |||||| ||| || | | | ||| ||| Sbjct 119485 ATAGGAGCAACGAGAAGAGAGTTTCTAAGACCGTGCTTAGCCATCTTC---TTCTTAAGA 119429 Query 106061 ACATCCCAGTCG--TAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCC 106118 | |||| || ||| | || ||| | | |||||||| || |||| | | | Sbjct 119428 GTAGCCCAATCCCATAGATCAG--TGGGAGTAACATCCCACATGTCGTATTGTAAAAGAC 119371 Query 106119 CTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCAC 106178 | | || | ||||| |||||| | ||||| |||| || | ||||| | |||| Sbjct 119370 CCTTAGAAGCAGGAGATCCCTCATAGGTCTCGTAGGCGCCATATTTCTCAGCAAGTTCAA 119311 Query 106179 AGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGG 106238 | || | | || || || ||||||||| |||| || |||| | ||||| Sbjct 119310 TTGAAGATTCTACAGCAGCATGGTAAATGGTTTCAGAGATTTGAATGTTCAATTGCTTGG 119251 Query 106239 CTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACAC 106298 ||||| || || |||| | ||| || || |||| || | |||||||| | Sbjct 119250 CTTCAGGAGAGTCGAATGGCAAACGGAGAGCCATGAAAGCATCAGCTAAACCTTGAATGC 119191 Query 106299 CCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAA 106355 | | | ||||||||||||| || | ||| ||| | ||| ||| || ||||| | Sbjct 119190 CAAGAGCAATAGGTCTGTGACGGAAGTTAC---TTCTCTCAGCCTCCTTTACTGGATAGA 119134 Query 106356 AATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTT 106415 | ||||||||||| | || | ||| | ||||| ||| | | ||| || || | Sbjct 119133 AGTTTCTGTCAATAATGACATTCAAGTTTCTAGTAACGGCCTTGGCAACTTCGTGGAGCT 119074 Query 106416 TTTCATAAT-----CAAAAGTGCGAGTCTCTTCATTG---ACATACTTTGGAAGGGCGAT 106467 | ||| | | || ||| | || ||| | ||| | ||||||| | Sbjct 119073 TCTCAAAGTTGTACCATAAG--CCTTCATCATCACTTTCAACAAAAGCAGGAAGGGACAA 119016 Query 106468 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 106527 || ||||| || ||||||||| || || | | |||||| | |||||| || Sbjct 119015 AGAAGCCAAGTTACAAACAGCCACTTCTTCAGGAGAAGAGTACTCGACAATTTCACAGCA 118956 Query 106528 CAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATC 106587 |||||||||| || || || |||| || | ||| |||||||| |||| || ||||| Sbjct 118955 CAAGTTGGAAGATTTGATAGTACCCAGGTTTTGTTGATTACTCTTGCTGTTACAAGCATC 118896 Query 106588 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA- 106646 ||||||||||||| |||| | || ||||| || || | || || || || | ||| | Sbjct 118895 CTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTTTGGGCCTCAAGGATAGCATACCAGAG 118836 Query 106647 CATCGGCGGCTGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGG 106705 | || | | || | | | | | | || | || || || |||||| |||||| Sbjct 118835 CTTCTGAGCCTTG-ATAGT-TCTTCTACCTTTGCCTTCTTTTTCATACTTTTCATAGAGG 118778 Query 106706 GCTTCAAACTCCTCACC---CACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAA 106762 || |||| || || || ||| |||| | ||| || || | || || | Sbjct 118777 GCAACAAATTCGTCTCCATAGACCTCGTC---CAAACCAGGACACTCATTAGGGCACATC 118721 Query 106763 AGAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 106820 | || ||| | || | | ||| || | ||||||||| | ||| || ||||| |||| Sbjct 118720 AAAGTCCAAT--CCTCGTTAGCCTTGACTCTCTTCATGAACAAGTCGGGGATCCAAAGGG 118663 Query 106821 ATGAAAAGAGATCTCT-ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGG 106879 | || | |||||| ||| || | ||||| | ||| ||||| ||| || || | | Sbjct 118662 CCAAGAACAAATCTCTGGCACGGA-CTTCTTCCTTACCGTGGTTCTTTCGCAAGTCGATG 118604 Query 106880 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCG 106935 || || | | ||| ||||||| ||||| | || | |||| || || || | | Sbjct 118603 AATTCAAAAACATCGTCGTGCCAAGGCTCCAAGTACATGGCGAAAGCACCTGGTCTCTTG 118544 Query 106936 ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 106995 ||| |||| | ||||| | || ||| ||| || || | | ||| || | ||| Sbjct 118543 -TTACCACCTTGGTCAACATATCTAGCAGTGTTGTTGAAAACTCTCAACATAGGGACAAT 118485 Query 106996 ACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGAT 107055 ||| | || ||| || || || |||| || | |||| | | || ||||| Sbjct 118484 ACCGTTAGAAGTACCGTTAGTACCGGCAATATAGGAACCAGTGGCACGGATATTGTGGAT 118425 Query 107056 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 107115 || |||||||| || || |||| ||||| ||||| | | | ||| |||| Sbjct 118424 ACTCAAACCAATACCACCTGCAGACTTCGAGATCAAGGCACAGGTCTTCAAAGTATCATA 118365 Query 107116 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 107175 |||||| | || ||||| ||||| || | | ||| ||| ||||| || || | Sbjct 118364 GATACCCTCAATGGAGTCATCCTTCATGTTTACCAAGAAACAAGACGACATTTGTGGCTT 118305 Query 107176 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCT 107234 || |||||||||||| | | || || | || ||| | || ||| ||| ||||| | Sbjct 118304 GGGAGTACCAGCATTGTACAAAGTAGGAGAAGCATGAGT-AAAGTACTTTTGTGACATGT 118246 Query 107235 TGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCA 107294 | ||| || || | | | ||||||| | || ||||| || | || || | || Sbjct 118245 AATTGTAAGTTTCAATGGCCTTGGCAATGTCCGCGCCATGGATACCAACAGCTACTCTCA 118186 Query 107295 TAAACATGTATTGGGGT 107311 | | ||| | ||| ||| Sbjct 118185 TGATCATATGTTGAGGT 118169 >seq155 Length=566151 Score = 120 bits (132), Expect = 4e-22 Identities = 687/1081 (64%), Gaps = 51/1081 (5%) Strand=Plus/Minus Query 105581 GCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGC 105640 || || | ||| | ||| ||||| || ||||||||||| | ||||| |||| | |||| Sbjct 483782 GCTTTTGTTCGTAAATAATACATTCCTGTCTTGAGTCCCTTCTTCCAGCCGTAGAAATGC 483723 Query 105641 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGG 105700 ||| || || ||| | || ||| ||| |||||||| ||||||||||||| |||| Sbjct 483722 ATACTAGTAAGTTTGCCAGTAGTGGGATTTTTCATGAAAATATTCATACTTTGAGACTGG 483663 Query 105701 TCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCAC 105760 |||||| | ||||| || | || |||||||| || | | ||| | | |||||| Sbjct 483662 TCAATGTATCGACCGCGGTCGGCGGCCATATCGATTATCACTTTCTGGCTCAATTCCCAG 483603 Query 105761 ACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACC- 105819 | || || | | ||| | ||| |||| || || || ||||| || || || Sbjct 483602 GCCGTCTTATATATCTCCTTCAAATCGCCTGGAATCTCATTAATGTTTTGGATAGAGCCA 483543 Query 105820 CCCCGCCT--TGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGA 105877 | | || | | |||| | | | ||||| ||| | ||| | | ||| Sbjct 483542 TCTTGACTAATTATCATG---TGCCTGATATCAGCATTCCACAAACCTAATTGGGCTAGA 483486 Query 105878 TCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAG 105937 || | || |||| | |||||||| || || || | ||| | || ||| Sbjct 483485 TCCCTTACAAGATATTCATTGACAATTTGGAATTCGCCAGAAAGGACCCGTCGAGTATAT 483426 Query 105938 ATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCT 105997 || || | ||| |||||||| || || || ||| | ||||| | || || || Sbjct 483425 ATATTTGATGTGATTGGTTCAAAACACTCGTTGAAACCAAGAATTTGCGAAGTCGAAGCG 483366 Query 105998 GTTGGCATTGGTGC--CATCAAAAGACTGTTACGAAGACC---CT------TTTC---CT 106043 || ||||||||||| || | ||||| || | ||| || || | || || Sbjct 483365 GTGGGCATTGGTGCGACAACTAAAGA--ATTCCTAAGTCCAAACTCGGAAATATCACGCT 483308 Query 106044 TGATGCGTTCCTTG----AGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCTTCCCAC 106099 | | || ||| | | || |||| |||| |||| | | |||| ||||| Sbjct 483307 TTAAGCTCTCCCAGTCCCATAA-ATCC--GTCG-CCTTGAAATCAGGCTCAC---CCCAC 483255 Query 106100 ATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCT 106159 | ||| ||||| | || ||| | || | |||||||||| | | | || || | || Sbjct 483254 AAATCGAATTGCAACATCCCCTTCGAAGCGGGAGAACCCGAATAACTATCGTATGGTCCG 483195 Query 106160 TGGGCTTCAGCCA-ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGAT 106218 | ||| || | | || || | ||||| | | || ||||| || |||||||| || Sbjct 483194 TTTTCTTTGGCTAGCTCCATAGAT-GCCTCGACTGCCGCATGATATATAGTTTCAAATAT 483136 Query 106219 ACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAAT-GCGTA-GCGGCACAAAATAAAT 106276 | |||| | |||||||| || |||||| || || || | | |||| | Sbjct 483135 TTGCACATTAAGTAATCTGGCTTCAGACGAGTCAAATGGCATACGCAGTTTCATATAAGT 483076 Query 106277 ACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGC 106336 ||| || | ||||| || || | | | || ||||||||| || ||||||| | | | Sbjct 483075 --ATCTGCCAATCCTTGGACTCCGACAGCTATGGGTCTGTGTTTCACATTAGACCTCCTC 483018 Query 106337 GCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 106396 |||| || |||||||| ||| |||| |||| ||| |||||| | | || | Sbjct 483017 GCAGATTCGACGGGATAGTCATTGATGTCTATGATCTTGTTCAGATTTCTAGCGACTACT 482958 Query 106397 TTTGTGATTTCATGAAGTTTTTCATAATCA----AAAGTGCGA----GT-CTCTTCATTG 106447 || | | ||||||||| |||||| | ||| | | | | || ||| || | | Sbjct 482957 TTGGCAACTTCATGAAGCTTTTCAAAGTCATACCATACCTCAACATCGTCCTCGTCGTAG 482898 Query 106448 ---ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT 106504 ||| || |||| | || || || || | ||| |||||||| |||||||| | Sbjct 482897 TGTACAAACGTTGGTAACGCTATAGAGGCGAGATTACAAACAGCGGTCTCATCAGGAGAC 482838 Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 | || | || ||||| |||||||| || || ||||| || || | ||| || ||| Sbjct 482837 GAATATTGTACTATTTCGGTACACAAATTTGACGATTTAATTGTGCCAAGATTATTCTGG 482778 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||| |||||| ||||| || || ||||| | || | || ||||| ||||| Sbjct 482777 TTTGACTTCCGGTTGCATGCATCTTTATATAGCATAAATGGATTACCAGTCTCGATCTGT 482718 Query 106625 G 106625 | Sbjct 482717 G 482717 >seq43 Length=391780 Score = 95.1 bits (104), Expect = 1e-14 Identities = 332/507 (65%), Gaps = 16/507 (3%) Strand=Plus/Plus Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 ||| || || | ||| || || | | ||| | ||||||||||||| | ||| || | Sbjct 81706 ACGGTCGAATCTACCAGGTCGCAATAACGCCTTATCAAGGATATCAGGTCTATTAGTGCC 81765 Query 9251 GGCGATGACAACAATACCTGTT--TCATTATCAAAACCATCCATCTCTGTCAAAAGTTGG 9308 || | || || | | || | ||| ||||||||||||| || | || ||| Sbjct 81766 TGCTAGCACGACGACA--TGATCATCAGAGGCAAAACCATCCATTTCAACGAGAATTTGA 81823 Query 9309 TTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATA----CCACCAGCACTGCGTTGC 9362 |||| ||| ||| | |||||| | | | | || | ||||| ||| || || Sbjct 81824 TTAAGAGTAGCTTCTCTTTCATCGTGACCACCGCCAAAAGAACCACCTTGACTACGA-GC 81882 Query 9363 T-TTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 9421 | |||| | ||||||||||||||||| || ||||||| || | | || || | Sbjct 81883 TCTTCCAATAGCATCAATCTCATCAATAAATACAATACTAGGAGCCTCCTTACGAGCTGT 81942 Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481 |||| ||||| | |||| | || || |||||||||||||||||||| || | | Sbjct 81943 AGCAAATAGATCTCTCACCCGGCTAGCACCAACACCAACAAACATCTCCACGAATTCCGA 82002 Query 9482 GGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9540 | | || ||| || || || ||| | ||||| || ||||| || || | || Sbjct 82003 GCCAGATACA-GAGAAAAATGGTACACCTGCCTCACCAGCTGTGGCTTTAGCAAGTAAAG 82061 Query 9541 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC-ACTT 9599 ||||||| ||||| || ||| | || | ||||| || || |||||||| || | || Sbjct 82062 TCTTACCAGTACCAGGAGGACCAGAAAGAACAGCACCTCGAGGGATCTTGGCACCTAATT 82121 Query 9600 CCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCG 9659 | |||| | |||| | || || ||| |||| ||| | ||| ||||| || Sbjct 82122 TC-TCGTATTTAGCAGGCTCTTTAAGGAAACTAACAAACTCCATGATTTCCTCTTTAGCC 82180 Query 9660 GCGTCAATCCCCTCAACATCGGTAAAC 9686 ||||| || ||||||||| |||| Sbjct 82181 TCGTCAGCGCCAGCAACATCGGAAAAC 82207 >seq78 Length=1347436 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || ||||| || ||||| | ||||| ||||| | || ||||| ||||| |||||| Sbjct 284568 CCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAAACCAGGCATAAGACCACGCTTC 284627 Query 117352 TTCAACCAATAAATA-GCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 117410 ||||||||| | ||| ||| ||||| || ||||||||||||||||| ||| || || Sbjct 284628 TTCAACCAAAAGATACTAGCA-AATGAACCAGAGAAGAAGATACCCTCGACAGCAGCGAA 284686 Query 117411 CGCAAAAAGGCGCTCGGCGAAGG 117433 |||| || ||||| || |||| Sbjct 284687 AGCAACGAGACGCTCAGCAAAGG 284709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979575789840