Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq79 291 9e-74 seq155 271 9e-68 seq78 212 7e-50 >seq79 Length=299291 Score = 291 bits (322), Expect = 9e-74 Identities = 1181/1863 (63%), Gaps = 29/1863 (2%) Strand=Plus/Minus Query 46971 TCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATA 47030 |||| || || || || | ||| ||| | |||| || || || | || |||||| Sbjct 119944 TCTTGATCAACGGTGAATTGAATAGGAGCAGAAGCTGCTTGAGTACGCAGGTAGTACATA 119885 Query 47031 CCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTA 47090 || ||||| | ||| ||||||||||||||||||||| || || || | || Sbjct 119884 CCTGTCTTGAGACCCTTTTGCCATCCATAGAAATGCATACTGGTCAACTTGCCCATAGTA 119825 Query 47091 GGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCT 47150 || || |||| || || | ||||||||| ||||||||| ||||| | | ||||| Sbjct 119824 GGAGCTTGGATATAGATGTTCAAAGATTGACTTTGATCAATATATGCAGCACGGTCAGCA 119765 Query 47151 GCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210 |||||||| | || | |||| | | |||||| || || || || | || ||| Sbjct 119764 GCCATATCAATGATTGTCTTTTGAGAGAGCTCCCAAACAGTCTTGTATAAAGCCTTGATG 119705 Query 47211 TCTTCTGGGAGATTAG---TATTTTGAATAGATCCTCCgttttctataattttgtttttt 47267 || || || | |||| | ||||||||||| || | | | || ||| |||| || Sbjct 119704 TCATCAGGAATGTTAGGGATGTTTTGAATAGAACCATTGCTAGCAATGATTCTGTTCTTC 119645 Query 47268 aattcatttgaccaaagttttcgt--tcagttaatgtttttaaAAGATGAG-GATTAACA 47324 | | ||| ||| | | | || | || | || || | | | || ||| Sbjct 119644 ATGT--TTTCACCCCACAATCCCAAGTC-GACAAGATCCTTCAACAACCATTGGTTGACA 119588 Query 47325 ATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATA 47384 || || || ||||||| || |||||||| || || || ||| || || || | | Sbjct 119587 ATCTGGAACTCTCCAGCAAGGACTCTACGAGAGTAGATGTTGGATGTGTAAGGCTCAAAA 119528 Query 47385 GATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAG 47444 ||||||| || || | ||||| | || || || |||||||| | ||||| | ||| Sbjct 119527 CATTCATTGTTACCGAGGATTTGGGAGGTCGAAGCAGTAGGCATAGGAGCAACGAG-AAG 119469 Query 47445 CTA-TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATC 47503 | ||||| | || | || |||| ||||||||| ||||| Sbjct 119468 AGAGTTTCTAAGACCGTGCTTAGCCATCTTCTTCTTAAGAGTAGCCCAATCCCATAGATC 119409 Query 47504 TGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATT 47563 | ||| ||||| ||| | || ||||| | || || ||| ||||| || | Sbjct 119408 AGTGGGAGTAACATCCCACATGTCGTATTGTAAAAGACCCTTAGAAGCAGGAGATCCCTC 119349 Query 47564 ATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATA 47623 ||| || | || | || ||| | ||| |||||| | ||| | ||| || Sbjct 119348 ATAGGTCTCGTAGGCGCCATATTTCTCAGCAAGTTCAATTGAAGATTCTACAGCAGCATG 119289 Query 47624 ATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTG-CTTCTGATGATTCAAAAGGAT 47682 || || |||||| | |||| ||||| | ||| |||| |||| | || || || || Sbjct 119288 GTAAATGGTTTCAGAGATTTGAATGTTCA-ATTGCTTGGCTTCAGGAGAGTCGAATGGCA 119230 Query 47683 ANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAG 47742 | || | ||| || || ||||||| |||| | |||| ||||| ||| Sbjct 119229 AACGGAGAGCCATGAAAGCATCAGCTAAACCTTGAATGCCAAGAGCAATAGGTCTGTGAC 119170 Query 47743 TTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTA 47802 ||| |||||| || || |||||| |||| | || ||||| ||| | Sbjct 119169 GGAAGTTACTTCTCTCAGCCTCCTTTACTGGATAGAAGTTTCTGTCAATAATGACATTCA 119110 Query 47803 GANNNNNNNNNNNNNNNNNNACAATTTC--------TCTTAATTTATTAAAATCAAACTT 47854 ||| ||| ||| || | || || | ||| Sbjct 119109 AGTTTCTAGTAACGGCCTTGGCAACTTCGTGGAGCTTCTCAAAGTTGTACCATAAGCCTT 119050 Query 47855 GTT----ATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCT 47910 | | || |||||| | ||| | | ||| || | ||||| ||||| || | Sbjct 119049 CATCATCACTTTCAACAAAAGCAGGAAGGGACAAAGAAGCCAAGTTACAAACAGCCACTT 118990 Query 47911 CATTTGGATTAGTATATTGTATTATTTCA--GCACATAGATTACCACATTTGATAGTACC 47968 | | ||| || || | | |||||| ||||| || || | ||||||||||||| Sbjct 118989 CTTCAGGAGAAGAGTACTCGACAATTTCACAGCACA-AG-TTGGAAGATTTGATAGTACC 118932 Query 47969 CAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCC 48028 || ||||| |||||| | ||||||| || |||||||| ||||| || || | || Sbjct 118931 CAGGTTTTGTTGATTACTCTTGCTGTTACAAGCATCCTTGTAGAGCATGAAGGGGTTACC 118872 Query 48029 AGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCT 48088 ||| || | || | |||| ||||| | ||| | || |||||| ||| ||| Sbjct 118871 AGTCTCAGTTTGGGCCTCAAGGATAGCATACCAGAGCTTCTGAGCCTTGATAGTTCTTCT 118812 Query 48089 AGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATT 48148 | |||| || | ||| || || ||| | ||||||| || ||||| || | Sbjct 118811 ACCTTTGCCTTCTTTTTCATACTTTTCATAGAGGGCAACAAATTCGTCTCCATAGACCTC 118752 Query 48149 ATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCT 48208 || || |||||||| |||||||| |||||||| | ||||||||| | | || ||||| Sbjct 118751 GTCCAAACCAGGACACTCATTAGGGCACATCAAAGTCCAATCCTCGTTAGCCTTGACTCT 118692 Query 48209 AGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTC 48268 |||| || | || || |||||||| || | || ||||| || | | | |||||| Sbjct 118691 CTTCATGAACAAGTCGGGGATCCAAAGGGCCAAGAACAAATCTCTGGCACGGACTTCTTC 118632 Query 48269 ATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAA 48328 || || ||| || | || | || || | | ||| | ||||| || || || Sbjct 118631 CTTACCGTGGTTCTTTCGCAAGTCGATGAATTCAAAAACATCGTCGTGCCAAGGCTCCAA 118572 Query 48329 ATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATT 48388 || || || | ||||||||| || ||||| ||||| || | |||||| ||||| || Sbjct 118571 GTACATGGCGAAAGCACCTGGTCTCTTGTTACCACCTTGGTCAACATATCTAGCAGTGTT 118512 Query 48389 GTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448 ||| ||||||| ||||| ||||||||||| || || |||| || || || | |||||| Sbjct 118511 GTTGAAAACTCTCAACATAGGGACAATACCGTTAGAAGTACCGTTAGTACCGGCAATATA 118452 Query 48449 ACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 ||| | || | ||||| || | ||| ||||||||||| || || || Sbjct 118451 GGAACCAGTGGCACGGATATTGTGGATACTCAAACCAATACCACCTGCAGACTTCGAGAT 118392 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568 | ||||| || | |||||||| || || || || ||||| |||| |||| Sbjct 118391 CAAGGCACAGGTCTTCAAAGTATCATAGATACCCTCAATGGAGTCATCCTTCATGTTTAC 118332 Query 48569 TAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGC 48628 | |||||| |||||||| || | ||| || | ||| | || || ||||| || Sbjct 118331 CAAGAAACAAGACGACATTTGTGGCTTGGGAGTACCAGCATTGTACAAAGTAGGAGAAGC 118272 Query 48629 ATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCA 48688 |||| |||| | || | ||| | | || || |||||||| | | || ||| Sbjct 118271 ATGAGTAAAGTACTTTTGTGACATGTAATTGTAAGTTTCAATGGCCTTGGCAATGTCCGC 118212 Query 48689 TTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTT 48748 ||| ||||| | || ||| | ||| | ||||| ||||||||| ||| ||||||| Sbjct 118211 GCCATGGATACCAACAGCTACTCTCATGATCATATGTTGAGGTCTCTCAGCAATTTTTCC 118152 Query 48749 ATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAA 48808 || || || | | || ||| ||||||| || || ||||| || |||||||| || || Sbjct 118151 GTTGATCTTGAGCAAGTAAGATCTTTCCAAGGTCTTGAAACCGAAGTAGTTGTAAGAGAA 118092 Query 48809 GTC 48811 || Sbjct 118091 ATC 118089 >seq155 Length=566151 Score = 271 bits (300), Expect = 9e-68 Identities = 591/875 (68%), Gaps = 16/875 (2%) Strand=Plus/Minus Query 47880 GCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCA 47939 |||||||| || |||||||| ||||| ||||| ||| | |||||||| |||||| Sbjct 482879 GCTATAGAGGCGAGATTACAAACAGCGGTCTCATCAGGAGACGAATATTGTACTATTTCG 482820 Query 47940 GCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACAT 47999 | ||| | ||| |||| || || || | ||| | || || ||| ||| Sbjct 482819 GTACACAAATTTGACGATTTAATTGTGCCAAGATTATTCTGGTTTGACTTCCGGTTGCAT 482760 Query 48000 GCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTC 48059 || || || || |||||||| || | ||||| || ||||| | ||| | || | | Sbjct 482759 GCATCTTTATATAGCATAAATGGATTACCAGTCTCGATCTGTGCTTCTAGTATCGCAAAC 482700 Query 48060 CAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTT-ATTATCATGTTCGTATTTAGTATA 48118 |||| || | | ||||| || | | | ||| || | || ||| | | || Sbjct 482699 CAAAGCTTC-TGGGCTTTAACTTTGCGCAATTGTCGATTTTCCTTCTCATATCGATTGTA 482641 Query 48119 TAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGA-CAT--TCATTAGGACA 48175 |||| ||||||||||| ||||| |||| | || ||||| | | ||||||| | | Sbjct 482640 TAACGCTTCAAATTCATCTCCATAAACATCTGCCAAGCCAGGTGCCTGGTCATTAGAAAA 482581 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 | | ||| || |||| || | ||| | ||||||| | ||| || ||||| || Sbjct 482580 AAGACA---CCATTCTTCATTATCGTGGACTTTCTTCATAAACAAATCCGGGATCCAGAG 482524 Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTT---AAGTTC 48292 ||| ||||| ||| | || ||| || || || |||||| || ||| |||| Sbjct 482523 AGCGTAAAATAGATCTCGAGCTCTCAGCTCCTCTTTGCCATGGTT--TTTCCGCAAGTCT 482466 Query 48293 AAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCG 48352 ||||| | | ||||||| ||||||| ||||||||||| || || | |||| || || Sbjct 482465 AAGAAT-TGGAATATATCACCATGCCAAGGTTCTAAATAAATAGCAAAAGCACCAGGCCG 482407 Query 48353 TTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGAC 48412 || || || |||||||| | ||| | |||||||| || ||||||| ||||||||| || Sbjct 482406 CTTGTTTCCGCCTTGATCGACATACCGAGCAGTATTATTGTAAACTCGTAACATTGGCAC 482347 Query 48413 AATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTAC- 48471 ||| || || || | |||||| |||| | |||||| ||||| | | | |||||| Sbjct 482346 AATTCCGTTCGAAGTTCCATTGCTTCCAGCAATATACGTTCCAGTGGAACGAATATTATG 482287 Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 || |||| || || ||||| || |||||||||| | ||||| || | ||||| Sbjct 482286 TACATGAAGG-CCAATTCCACCGGCAGTTTTAGATATCATCGCACAATCCTTCAAGGTAT 482228 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCG 48591 | ||||| || || ||| ||||||| ||||| | || ||| ||| || | ||| | Sbjct 482227 CGTAAATACCCTCGATAGAATCATCTCTCATAGCCACTAAAAAGCAAGACGATAGTTGAG 482168 Query 48592 GATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATA 48651 ||| || || ||||||||||| ||||| || |||||| | || |||| || || | Sbjct 482167 GATTGGGTGTACCAGAATTAAATAAAGTTGGTGAAGCATGAGTGAAGTATTTTTCAGACA 482108 Query 48652 ACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACAC 48711 |||| ||||||||| || || ||||| | || ||||| | || || | Sbjct 482107 TCAATCGATATGTTTCTATCACCTTTGGAATATCATTTCCGTGGATACCCACAGCCACTC 482048 Query 48712 GCATTAACATATATTGAGGTCTTTCAACAATTTTG 48746 ||||||||| | ||| || || || || ||| || Sbjct 482047 TCATTAACATCTGTTGGGGCCTCTCGACGATTCTG 482013 >seq78 Length=1347436 Score = 212 bits (234), Expect = 7e-50 Identities = 601/916 (66%), Gaps = 17/916 (2%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 |||||| || || | ||||| || || ||||||||||| || || | || || Sbjct 284255 TTTTTGGTAGTCAGAGACTCTCTTCTCGAAGAAATTAGTCTTACCAGAGAGAGAGATGTT 284314 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||| || ||||| | |||| || | || ||| ||| | | | Sbjct 284315 CTCCATGAAATCGAAGGGATTAGTAGCATTGTAGACCTTGTTGTTTCCAAGGGAAAGCAA 284374 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || ||| || || ||||| | ||| ||| ||| | | | ||||||||| | | Sbjct 284375 TAATCTGTCAGCGACAAACTCAATGTATTGACACATGAGCTTAGCATTCATTCCAAGAAG 284434 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 || || | ||||| || | ||||| | ||| ||| || || || | ||||| Sbjct 284435 ACTACATGGCAAGGCATCAGTCAAGAATTCCTTTTCAATACCGACAGCTTCAGTAATAAT 284494 Query 18909 AGATACAACTCTAT-CTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | |||| | |||| ||||| || | ||| || ||| | |||||| || | Sbjct 284495 CTTTTCAACAACAGACTTC-TTAGGTCTGTTGACAAGGTGGCCAAAAAGCAAACAAGCGA 284553 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 ||||| || | || || || | | ||||| |||||||| || || |||||||||| Sbjct 284554 AATCAGTGTGCATGCCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAAACCAGGCA 284613 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 | || || | || || ||||| || ||| ||||||||| ||||| ||||| ||||| | Sbjct 284614 TAAGACCACGCTTCTTCAACCAAAAGATACTAGCAAATGAACCAGAGAAGAAGATACCCT 284673 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | || || || |||||||| || | || || | ||| | || || | ||||| Sbjct 284674 CGACAGCAGCGAAAGCAACGAGACGCTCAGCAAAGGTAGATTGATCATCAGAGATCCAAG 284733 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 | || ||||| ||||||||||| || | ||| || || | || |||| || || | Sbjct 284734 TTAGGGCCCAGTCAGCCTTCTTCTTAATACAAGGAATGTTATCAATAGCATGGAACAAGA 284793 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | || ||| | | ||| || | ||| | ||| || | ||| ||| | || | || Sbjct 284794 AGTTAGCCTCCTTAGCATCCTTGATATAAGTATCAATAAGTAAGGAGTAAGTCTCAGCAT 284853 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 | ||||| || || || || |||||||| ||||| | || || | ||||| || | Sbjct 284854 GGATATTCTCCATCATGATTTGGAATCCGTAGAAACACTTGGCCTCAGGAATCTGGACCT 284913 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 ||| | | ||||| || || | || ||||| || || ||||| || ||||| || | Sbjct 284914 CACCAGAGAATCTCTCAACAAGGTTCTCATTGACAATACCATCGGAGGCAGCAAAGAAAG 284973 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATC-TGAGGTTAA---TGTATT-CCAATCATT 19442 | | ||| | ||||| | | ||||| | | |||| || || ||| ||| | Sbjct 284974 CGAGCACACGAGAGATAAAGAATCTCTCATCATCA--TTAAGACGGTGTTCCCAGTCACT 285031 Query 19443 AATATCTTT----AGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 |||||| || |||| |||| |||||| | ||||| ||||| ||||| |||| | Sbjct 285032 AATATCCTTTCCAAGATCAATC----TCTTCAGCAGTCCAGAAAGAGGCCTCAGCTTGCT 285087 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTT 19558 | ||||| | ||| || ||| | || | ||||| || | |||||||| || || | Sbjct 285088 TGTACATTTGCCAGATCTCATGGTACTTGATAGGGAACAAGACAAATCTGTTAGGGTTCT 285147 Query 19559 CTTTAAGAATAGGTTC 19574 | | ||| | |||||| Sbjct 285148 CCTGAAGGAGAGGTTC 285163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107633624240