Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq90 95.1 9e-15 seq32 95.1 9e-15 >seq90 Length=207308 Score = 95.1 bits (104), Expect = 9e-15 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| || ||||||||||| ||| | ||| |||| || | |||||||| ||||| Sbjct 159098 CTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCCTCAAGTTGCTTACCAGCAAA 159157 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| || |||||||| | ||||| ||||||||||| ||||| || ||| Sbjct 159158 GATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATT 159217 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||| ||||| | || || || || || || | || || || Sbjct 159218 GTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGAC 159277 Query 48755 AAAAATCTGCATCGT 48769 ||||| |||||||| Sbjct 159278 GAAAATTTGCATCGT 159292 >seq32 Length=396137 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | ||||| || || ||| ||| || || || ||||| ||||| Sbjct 380523 CCGCCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 380582 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| |||| |||||||||||||| || || || || || ||||| || | |||| Sbjct 380583 AGGGTTCTGCCGTCTTCCAACTGCTTACCAGCGAAGATAAGACGTTGTTGGTCTGGGGGA 380642 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || || | | | || || | ||| ||| Sbjct 380643 ATGCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCGACC 380702 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || |||| ||| || ||||| || ||||| Sbjct 380703 TCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATTTGCAT 380749 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| |||||||| || ||||||||||| ||| | ||| |||| ||| Sbjct 381681 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCTTCC 381740 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||||| || || |||| |||||||| || | |||| || |||||||| | Sbjct 381741 AGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGA 381800 Query 48678 ATCTT 48682 ||||| Sbjct 381801 ATCTT 381805 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| |||||||| || ||||||||||| ||| | || | || || Sbjct 380997 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCCATCCTCG 381056 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||||| || || |||| |||||||| || | ||||| ||||||||||| Sbjct 381057 AGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGG 381116 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | | || || | || || || | || || || || Sbjct 381117 ATCTTGGTCTTAACATTATCGATGGTGTCGGAAGATTCAACTTCGAGAGTGATGGTCTTA 381176 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || || || ||||| Sbjct 381177 CCAGTCAAGGTCTTGACGAAGATTTGCAT 381205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936829315618