Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq78 109 8e-19
>seq78
Length=1347436
Score = 109 bits (120), Expect = 8e-19
Identities = 542/854 (63%), Gaps = 20/854 (2%)
Strand=Plus/Plus
Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920
||||||| ||| || |||| | |||||||||||||| ||||| || | || ||
Sbjct 284253 GCTTTTTGGTAGTCAGAGACTCTCTTCTCGAAGAAATTAGTCTTACCAGAGAGAGAGATG 284312
Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTAT 17980
| ||| ||||| || |||||||| | || || || | ||| | | | |
Sbjct 284313 TTCTCCATGAAATCGAAGGGATTAGTAGCATTGTAGACCTTGT--TGTTTCCAAGGGAAA 284370
Query 17981 --AATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTA 18038
|||||||| || || ||||| || | ||||| |||| | | |||||| || |
Sbjct 284371 GCAATAATCTGTCAGCGACAAACTCAATGTATTGACACATGAGCTTAGCATTCATTCCAA 284430
Query 18039 GTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTA 18098
| || || | || | |||||| | | ||||| || || || | |||| || | |
Sbjct 284431 GAAGACTACATGGCAAGGCATCAGTCAAGAATTCCTTTTCAATACCGACAGCTTCAGTAA 284490
Query 18099 TTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAAC 18158
| || ||| || ||| || | | || | | ||| | || | ||||
Sbjct 284491 TAATCTTTTCAACAACAGACTTCTTAGGTCTGTTGACAAGGTGGCCAAAA---AGCAAAC 284547
Query 18159 ACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACC 18218
| || ||||||||||| | |||||||| | || || || || ||| || || || |
Sbjct 284548 AAGCGAAATCAGTGTGCATGCCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAAAC 284607
Query 18219 CGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATA 18278
| ||||| | ||| | || || | |||||| || || || || ||| ||||| |
Sbjct 284608 CAGGCATAAGACCACGCTTCTTCAACCAAAAGATACTAGCAAATGAACCAGAGAAGAAGA 284667
Query 18279 TACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG- 18336
||||||| || ||| ||||| || | | | |||||||| | ||| | | ||||
Sbjct 284668 TACCCTCGACAGCA-GCGAAAGCAACGAGACGCTCAGCAAAGGTAGATTGA-TCATCAGA 284725
Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396
||||| || | ||||| || | | ||||| || || | || |||||||
Sbjct 284726 GATCCAAGTTAGGGCCCAGTCAGCCTTCTTCTTAATACAAGGAATGTTATCAATAGCATG 284785
Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456
||||| | || || | ||| || |||||||| || || | || || || |
Sbjct 284786 GAACAAGAAGTTAGCCTCCTTAGCATCCTTGATATAAGTATCAATAAGTAAGGAGTAAGT 284845
Query 18457 TTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATA 18516
|||| ||| || | ||||| || || || | || || | | ||||| |||
Sbjct 284846 CTCAGCATGGATATTCTCCATCATGATTTGGAATCCGTAGAAACACTTGGCCTCAGGAAT 284905
Query 18517 TTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGC 18576
|| | ||| | | | ||||| || || | |||||||| || ||||| || | | ||
Sbjct 284906 CTGGACCTCACCAGAGAATCTCTCAACAAGGTTCTCATTGACAATACCATCGGAGGCAGC 284965
Query 18577 GAAAAATGC---CAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGA--TTGTT- 18630
|| || || || | | | ||| ||| | | |||| ||| || ||| ||||
Sbjct 284966 AAAGAAAGCGAGCACACGAGAGATAAAGAA---TCTCTCATCATCATTAAGACGGTGTTC 285022
Query 18631 CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGC 18690
||| ||| ||||| ||| ||||||| ||||| | ||||| ||||| | || ||
Sbjct 285023 CCAGTCACTAATATCCTTTCCAAGATCAATCTCTTCAGCAGTCCAGAAAGAGGCCTCAGC 285082
Query 18691 CTGTTTGTACATTT 18704
|| ||||||||||
Sbjct 285083 TTGCTTGTACATTT 285096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731870481365600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |