Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq78 109 8e-19 >seq78 Length=1347436 Score = 109 bits (120), Expect = 8e-19 Identities = 542/854 (63%), Gaps = 20/854 (2%) Strand=Plus/Plus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 ||||||| ||| || |||| | |||||||||||||| ||||| || | || || Sbjct 284253 GCTTTTTGGTAGTCAGAGACTCTCTTCTCGAAGAAATTAGTCTTACCAGAGAGAGAGATG 284312 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTAT 17980 | ||| ||||| || |||||||| | || || || | ||| | | | | Sbjct 284313 TTCTCCATGAAATCGAAGGGATTAGTAGCATTGTAGACCTTGT--TGTTTCCAAGGGAAA 284370 Query 17981 --AATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTA 18038 |||||||| || || ||||| || | ||||| |||| | | |||||| || | Sbjct 284371 GCAATAATCTGTCAGCGACAAACTCAATGTATTGACACATGAGCTTAGCATTCATTCCAA 284430 Query 18039 GTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTA 18098 | || || | || | |||||| | | ||||| || || || | |||| || | | Sbjct 284431 GAAGACTACATGGCAAGGCATCAGTCAAGAATTCCTTTTCAATACCGACAGCTTCAGTAA 284490 Query 18099 TTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAAC 18158 | || ||| || ||| || | | || | | ||| | || | |||| Sbjct 284491 TAATCTTTTCAACAACAGACTTCTTAGGTCTGTTGACAAGGTGGCCAAAA---AGCAAAC 284547 Query 18159 ACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACC 18218 | || ||||||||||| | |||||||| | || || || || ||| || || || | Sbjct 284548 AAGCGAAATCAGTGTGCATGCCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAAAC 284607 Query 18219 CGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATA 18278 | ||||| | ||| | || || | |||||| || || || || ||| ||||| | Sbjct 284608 CAGGCATAAGACCACGCTTCTTCAACCAAAAGATACTAGCAAATGAACCAGAGAAGAAGA 284667 Query 18279 TACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG- 18336 ||||||| || ||| ||||| || | | | |||||||| | ||| | | |||| Sbjct 284668 TACCCTCGACAGCA-GCGAAAGCAACGAGACGCTCAGCAAAGGTAGATTGA-TCATCAGA 284725 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 ||||| || | ||||| || | | ||||| || || | || ||||||| Sbjct 284726 GATCCAAGTTAGGGCCCAGTCAGCCTTCTTCTTAATACAAGGAATGTTATCAATAGCATG 284785 Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456 ||||| | || || | ||| || |||||||| || || | || || || | Sbjct 284786 GAACAAGAAGTTAGCCTCCTTAGCATCCTTGATATAAGTATCAATAAGTAAGGAGTAAGT 284845 Query 18457 TTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATA 18516 |||| ||| || | ||||| || || || | || || | | ||||| ||| Sbjct 284846 CTCAGCATGGATATTCTCCATCATGATTTGGAATCCGTAGAAACACTTGGCCTCAGGAAT 284905 Query 18517 TTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGC 18576 || | ||| | | | ||||| || || | |||||||| || ||||| || | | || Sbjct 284906 CTGGACCTCACCAGAGAATCTCTCAACAAGGTTCTCATTGACAATACCATCGGAGGCAGC 284965 Query 18577 GAAAAATGC---CAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGA--TTGTT- 18630 || || || || | | | ||| ||| | | |||| ||| || ||| |||| Sbjct 284966 AAAGAAAGCGAGCACACGAGAGATAAAGAA---TCTCTCATCATCATTAAGACGGTGTTC 285022 Query 18631 CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGC 18690 ||| ||| ||||| ||| ||||||| ||||| | ||||| ||||| | || || Sbjct 285023 CCAGTCACTAATATCCTTTCCAAGATCAATCTCTTCAGCAGTCCAGAAAGAGGCCTCAGC 285082 Query 18691 CTGTTTGTACATTT 18704 || |||||||||| Sbjct 285083 TTGCTTGTACATTT 285096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870481365600