Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq32 107 4e-18 seq78 98.7 2e-15 seq111 95.1 2e-14 seq90 91.5 3e-13 >seq32 Length=396137 Score = 107 bits (118), Expect = 4e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | ||||| | || | || | ||||| ||| ||| || || || || || Sbjct 381204 ATACCACCACGGAGACGAAGGACGAGGTGGAGAGTAGACTCCTTTTGA-ATGTTGTAGTC 381262 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| | |||| |||| || | ||| |||||||||||||| | ||| ||||| || || Sbjct 381263 AGAAAGAGTTCTGCCATCCTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGG 381322 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || || ||||| || || || | || |||||| || | || || || || Sbjct 381323 GGGAATACCCTCCTTATCCTGAATCTTGGTCTTAACATTATCGATGGTGTCAGAAGACTC 381382 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||| ||||| || || |||||||| | || || | || || ||||| Sbjct 381383 TACTTCGAGAGTGATAGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 381433 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || | || | ||||| ||| || ||| || || ||| Sbjct 381432 ATACCACCACGGAGACGAAGGACGAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCA 381491 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | ||| || ||||||||||| | ||| ||||| || || Sbjct 381492 GAGAGAGTACGGCCATCCTCGAGTTGCTTGCCAGCAAAGATGAGTCTTTGTTGGTCTGGG 381551 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || | || ||||| |||| ||| || ||||| Sbjct 381552 GGAATACCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCAATAGTATCAGAAGATTCG 381611 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || || ||||| || || || | || || ||||| Sbjct 381612 ACCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 381661 >seq78 Length=1347436 Score = 98.7 bits (108), Expect = 2e-15 Identities = 276/419 (66%), Gaps = 15/419 (4%) Strand=Plus/Plus Query 49647 AATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAAT 49706 |||||||| || || ||||| |||| ||||| |||| | | | |||||| || | Sbjct 284373 AATAATCTGTCAGCGACAAACTCAATGTATTGACACATGAGCTTAGCATTCATTCCAAGA 284432 Query 49707 AATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaat 49765 | || |||| || |||||| |||| || ||| ||||| || | ||||||| |||| Sbjct 284433 AGACTACATGGCAAGGCATCAGTCAAGAA-TTCCTTTTCAATACCGACAGCTTCAGTAAT 284491 Query 49766 tatcat---aattatattattttttgataatttatatttaatatgattcgcatatattaa 49822 ||| | || | | || || | | || | | | | || | | || Sbjct 284492 AATCTTTTCAACAACAGACTTCTTAGGTCTGTTG------ACAAGGTGGCCAAAAAGCAA 284545 Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882 ||| || |||||||| || | || || || | ||| || || |||||| ||||| || Sbjct 284546 ACAAGCGAAATCAGTGTGCATGCCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAA 284605 Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942 || ||||| | || | ||| || | |||||| || ||||| || ||| ||||| Sbjct 284606 ACCAGGCATAAGACCACGCTTCTTCAACCAAAAGATACTAGCAAATGAACCAGAGAAGAA 284665 Query 49943 TATACCCTCGACACACGCAAATGCTATTATTCTTGCTC--CAAACATTAATTTATCATCT 50000 |||||||||||| || || || | | | |||| |||| | ||| |||||| Sbjct 284666 GATACCCTCGACAGCAGCGAAAGCAACGAGAC--GCTCAGCAAAGGTAGATTGATCATCA 284723 Query 50001 AATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 50059 | |||||| ||| ||||| || || || || || ||| |||| || || || ||||| Sbjct 284724 GAGATCCAAGTTAGGGCCCAGTCAGCCTTCTTCTTAATACAAGGAATGTTATCAATAGC 284782 >seq111 Length=751517 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| ||||||||||| | ||| | || | || | ||||| ||| || ||| || || Sbjct 299263 AATGATACCACCTCTCAAACGGAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTGTA 299204 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 ||||| | |||| |||| || | ||| |||||||| ||||| | | |||||||| Sbjct 299203 GTCAGAAAGGGTTCTGCCATCTTCGAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATC 299144 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 || || |||||||| || || || || || | || ||||| || | || || || Sbjct 299143 TGGGGGAATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCGGAAGA 299084 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 || || || || || ||||| |||||||| Sbjct 299083 CTCGACCTCGAGGGTGATGGTCTTACCAGT 299054 >seq90 Length=207308 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | || | ||||| ||| || ||| || |||||||| Sbjct 159062 ACCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGA 159121 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || | || || | ||| |||||||||||||| || | |||||||| || || Sbjct 159122 AAGAGTACGACCGTCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGG 159181 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| || || ||||| || || | || ||||| || | || || || || || Sbjct 159182 AATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGACTCAAC 159241 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| ||||| || | || || | || || ||||| Sbjct 159242 CTCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCAT 159289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984477906134100