Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq32 107 4e-18
seq78 98.7 2e-15
seq111 95.1 2e-14
seq90 91.5 3e-13
>seq32
Length=396137
Score = 107 bits (118), Expect = 4e-18
Identities = 164/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365
|||||||| | ||||| | || | || | ||||| ||| ||| || || || || ||
Sbjct 381204 ATACCACCACGGAGACGAAGGACGAGGTGGAGAGTAGACTCCTTTTGA-ATGTTGTAGTC 381262
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
||| | |||| |||| || | ||| |||||||||||||| | ||| ||||| || ||
Sbjct 381263 AGAAAGAGTTCTGCCATCCTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGG 381322
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || || || ||||| || || || | || |||||| || | || || || ||
Sbjct 381323 GGGAATACCCTCCTTATCCTGAATCTTGGTCTTAACATTATCGATGGTGTCAGAAGACTC 381382
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|||||| ||||| || || |||||||| | || || | || || |||||
Sbjct 381383 TACTTCGAGAGTGATAGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 381433
Score = 104 bits (114), Expect = 5e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||||| | || | || | ||||| ||| || ||| || || |||
Sbjct 381432 ATACCACCACGGAGACGAAGGACGAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCA 381491
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| || | ||| || ||||||||||| | ||| ||||| || ||
Sbjct 381492 GAGAGAGTACGGCCATCCTCGAGTTGCTTGCCAGCAAAGATGAGTCTTTGTTGGTCTGGG 381551
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || || ||||| || || | || ||||| |||| ||| || |||||
Sbjct 381552 GGAATACCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCAATAGTATCAGAAGATTCG 381611
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || ||||| || || ||||| || || || | || || |||||
Sbjct 381612 ACCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 381661
>seq78
Length=1347436
Score = 98.7 bits (108), Expect = 2e-15
Identities = 276/419 (66%), Gaps = 15/419 (4%)
Strand=Plus/Plus
Query 49647 AATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAAT 49706
|||||||| || || ||||| |||| ||||| |||| | | | |||||| || |
Sbjct 284373 AATAATCTGTCAGCGACAAACTCAATGTATTGACACATGAGCTTAGCATTCATTCCAAGA 284432
Query 49707 AATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaat 49765
| || |||| || |||||| |||| || ||| ||||| || | ||||||| ||||
Sbjct 284433 AGACTACATGGCAAGGCATCAGTCAAGAA-TTCCTTTTCAATACCGACAGCTTCAGTAAT 284491
Query 49766 tatcat---aattatattattttttgataatttatatttaatatgattcgcatatattaa 49822
||| | || | | || || | | || | | | | || | | ||
Sbjct 284492 AATCTTTTCAACAACAGACTTCTTAGGTCTGTTG------ACAAGGTGGCCAAAAAGCAA 284545
Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882
||| || |||||||| || | || || || | ||| || || |||||| ||||| ||
Sbjct 284546 ACAAGCGAAATCAGTGTGCATGCCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAA 284605
Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942
|| ||||| | || | ||| || | |||||| || ||||| || ||| |||||
Sbjct 284606 ACCAGGCATAAGACCACGCTTCTTCAACCAAAAGATACTAGCAAATGAACCAGAGAAGAA 284665
Query 49943 TATACCCTCGACACACGCAAATGCTATTATTCTTGCTC--CAAACATTAATTTATCATCT 50000
|||||||||||| || || || | | | |||| |||| | ||| ||||||
Sbjct 284666 GATACCCTCGACAGCAGCGAAAGCAACGAGAC--GCTCAGCAAAGGTAGATTGATCATCA 284723
Query 50001 AATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 50059
| |||||| ||| ||||| || || || || || ||| |||| || || || |||||
Sbjct 284724 GAGATCCAAGTTAGGGCCCAGTCAGCCTTCTTCTTAATACAAGGAATGTTATCAATAGC 284782
>seq111
Length=751517
Score = 95.1 bits (104), Expect = 2e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362
||| ||||||||||| | ||| | || | || | ||||| ||| || ||| || ||
Sbjct 299263 AATGATACCACCTCTCAAACGGAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTGTA 299204
Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422
||||| | |||| |||| || | ||| |||||||| ||||| | | ||||||||
Sbjct 299203 GTCAGAAAGGGTTCTGCCATCTTCGAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATC 299144
Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482
|| || |||||||| || || || || || | || ||||| || | || || ||
Sbjct 299143 TGGGGGAATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCGGAAGA 299084
Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGT 192512
|| || || || || ||||| ||||||||
Sbjct 299083 CTCGACCTCGAGGGTGATGGTCTTACCAGT 299054
>seq90
Length=207308
Score = 91.5 bits (100), Expect = 3e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||||| | || | || | ||||| ||| || ||| || ||||||||
Sbjct 159062 ACCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGA 159121
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
| || || | || || | ||| |||||||||||||| || | |||||||| || ||
Sbjct 159122 AAGAGTACGACCGTCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGG 159181
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
||||| || || ||||| || || | || ||||| || | || || || || ||
Sbjct 159182 AATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGACTCAAC 159241
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || ||||| ||||| || | || || | || || |||||
Sbjct 159242 CTCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCAT 159289
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984477906134100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |