Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq155 226 8e-54 seq79 131 5e-25 seq78 118 3e-21 seq90 89.7 2e-12 seq100 84.2 6e-11 >seq155 Length=566151 Score = 226 bits (250), Expect = 8e-54 Identities = 576/867 (66%), Gaps = 17/867 (2%) Strand=Plus/Minus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCTACAATCTCACA 155647 ||||| || |||||||| || || ||||| | | | || |||| ||| || || Sbjct 482876 ATAGAGGCGAGATTACAAACAGCGGTCTCATCAGGAGACGAA-TATTGTACTATTTCGGT 482818 Query 155648 GCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGC 155707 |||| || || || || ||||| | ||| |||||||| || || | ||| || || Sbjct 482817 ACACAAATTTGACGATTTAATTGTGCCAAGATTATTCTGGTTTGACTTCCGGTTGCATGC 482758 Query 155708 ATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCA 155767 ||| || ||||| || |||| | || ||||| |||||||| || || ||| | ||| Sbjct 482757 ATCTTTATATAGCATAAATGGATTACCAGTCTCGATCTGTGCTTCTAGTATCGCAAACCA 482698 Query 155768 GAGGTCACGGGCATTAA-TTTGC----TTGTTGTATCTGCCTTCCGACTCATATTTCATA 155822 || | |||| |||| ||||| |||| | || | ||||| |||||| | Sbjct 482697 AAGCTTCTGGGCTTTAACTTTGCGCAATTGTCG-ATTTTCCTTC----TCATATCGATTG 482643 Query 155823 TACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAA 155882 || | || | | || || || ||| ||| || ||||| || || || Sbjct 482642 TATAACGCTTCAAATTCATCTCCATAAACATCTGCCAAGCCAGGTGCCTGGTCATTAGAA 482583 Query 155883 AACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATA 155942 || || |||| || |||| || || || |||||| | ||| ||| | | Sbjct 482582 AAAAGACACCATTCTTCATTATCGTGGACTTTCTTCATAAACAAATCCGGGATCCAGAGA 482523 Query 155943 GCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAG 156002 || || || || || | || | |||||| | ||| || || ||||| | |||||| Sbjct 482522 GCGTAAAATAGATCTCGAGCTCTCAGCTCCTCTTTGCCATGGTTTTTCCGCAAGTCTAAG 482463 Query 156003 AATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG 156062 |||| |||||| ||| || || | ||| ||||||||| |||| || |||| Sbjct 482462 AATTGGAATATATCACCATGCCAAGGTTCTAAATAAATAGCAAAAGCACCAGGCCGCTTG 482403 Query 156063 ---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || || ||||| |||||||||||||| |||||| | || | || ||| || | ||| Sbjct 482402 TTTCCGCCTTGATCGACATACCGAGCAGTATTATTGTAAACTCGTAACATTGGCACAATT 482343 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 || || ||||| |||||| |||| ||||| || |||| || |||| |||||| | | Sbjct 482342 CCGTTCGAAGTTCCATTGCTTCCAGCAATATACGTTCCAGTGGAACGAATATTATGTACA 482283 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 || || ||||| ||||| | |||||| || || || ||||| | |||| | || Sbjct 482282 TGAAGGCCAATTCCACCGGCAGTTTTAGATATCATCGCACAATCCTTCAAGGTATCGTAA 482223 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 ||||| || |||||||||||| ||| | | || | |||| || || |||||| Sbjct 482222 ATACCCTCGATAGAATCATCTCTCATAGCCACTAAAAAGCAAGACGATAGTTGAGGATTG 482163 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAA 156359 ||||| |||| || |||| || |||| |||||| | || || || | |||||| || Sbjct 482162 GGTGTACCAGAATTAAATAAAGTTGGTGAAGCATGAGTGAAGTATTTTTCAGACAT-CAA 482104 Query 156360 TCG-TATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCAT 156418 ||| ||||| || | | ||| || || | ||||| |||| | || || ||||| Sbjct 482103 TCGATATGTTTCTATCACCTTTGGAATATCATTTCCGTGGATACCCACAGCCACTCTCAT 482044 Query 156419 CCACATATGCTGAGGACGCTCTACAAT 156445 |||| || || || | ||| || || Sbjct 482043 TAACATCTGTTGGGGCCTCTCGACGAT 482017 >seq79 Length=299291 Score = 131 bits (144), Expect = 5e-25 Identities = 578/907 (64%), Gaps = 11/907 (1%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || ||||| |||||||||| ||| ||| ||||| || || | || | || || Sbjct 118976 GTACTCGACAATTTCACAGCACAAGTTGGAAGATTTGATAGTACCCAGGTTTTGTTGATT 118917 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 | || |||||||||||||||||||| || ||| | ||| | || ||||| | || || Sbjct 118916 ACTCTTGCTGTTACAAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTTTGGGC 118857 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCT--GCCTTCC 155807 || || || |||||| | | || || || || || || || |||||| Sbjct 118856 CTCAAGGATAGCATACCAGAGCTTCTGAGCCTTGATAG--TTCTTCTACCTTTGCCTTCT 118799 Query 155808 GACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||||| || ||| || | | || || || || || || ||||| Sbjct 118798 TTTTCATACTTTTCATAGAGGGCAACAAATTCGTCTCCATAGACCTCGTCCAAACCAGGA 118739 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACA 155927 |||| || ||||| | || | |||| | ||| | | || | || ||| || | Sbjct 118738 CACTCATTAGGGCACATCAAAGTCCAATCCTCGTTAGCCTTGACTCTCTTCATGAACAAG 118679 Query 155928 TCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCT-CATCGCCGTGATT 155986 || ||||| || |||| | || || || |||| || | | ||||| || Sbjct 118678 TCGGGGATCCAAAGGGCCAAGAACAAATCTCTGGCACG-GACTTCTTCCTTACCGTGGTT 118620 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| || | || | |||||| || ||| || ||||||| ||||| || || Sbjct 118619 CTTTCGCAAGTCGATGAATTCAAAAACATCGTCGTGCCAAGGCTCCAAGTACATGGCGAA 118560 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 | ||| |||||| ||||| || || ||||| | |||||| || ||||| || | Sbjct 118559 AGCACCTGGTCTCTTGTTACCACCTTGGTCAACATATCTAGCAGTGTTGTTGAAAACTCT 118500 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 | |||||| | |||||| || ||||| || || || ||| ||||| ||||||| | Sbjct 118499 CAACATAGGGACAATACCGTTAGAAGTACCGTTAGTACCGGCAATATAGGAACCAGTGGC 118440 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTC 156223 || | ||| || ||| | ||||||||||||| | || || || || || Sbjct 118439 ACGGATATTGTGGATACTCAAACCAATACCACCTGCAGACTTCGAGATCAAGGCACAGGT 118380 Query 156224 CTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGA 156283 ||| | ||||| | ||||| ||||| || ||||| | ||| || | | || || Sbjct 118379 CTTCAAAGTATCATAGATACCCTCAATGGAGTCATCCTTCATGTTTACCAAGAAACAAGA 118320 Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 | ||| || || || ||||| ||| | | ||||| | |||||| |||| || Sbjct 118319 CGACATTTGTGGCTTGGGAGTACCAGCATTGTACAAAGTAGGAGAAGCATGAGTAAAGTA 118260 Query 156344 CTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACA 156403 ||| | ||||| |||| ||| || || | ||| ||| | | || || |||| Sbjct 118259 CTTTTGTGACATGTAATTGTAAGTTTCAATGGCCTTGGCAATGTCCGCGCCATGGATACC 118200 Query 156404 GATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAG 156463 | || || ||||| |||||| ||||| | ||| |||| ||| | || || Sbjct 118199 AACAGCTACTCTCATGATCATATGTTGAGGTCTCTCAGCAATTTTTCCGTTGATCTTGAG 118140 Query 156464 AAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA-ATCAAACAGAAAATCACGGTTGT 156522 | ||| | | ||||| || || || ||||| || | || || |||||||| | || Sbjct 118139 CAAGTAAGATCTTTCCAAGGTCTTGAAACCGAAGTAGTTGTAAGAG-AAATCACGATCGT 118081 Query 156523 AATCAAT 156529 | |||| Sbjct 118080 ATACAAT 118074 Score = 111 bits (122), Expect = 5e-19 Identities = 109/140 (78%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | |||||| |||||| | || ||||| |||||| | ||||||||| Sbjct 233495 AGAATTTCCTTGAGACGGGGTACACCAAGAGTGACGTT---CTTGGATGACACACCAGCA 233551 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 ||||||||||||||| || | ||| |||| ||||||||| |||||||| || || | Sbjct 233552 TAGTGGAAAGTATTCAATGTCATTTGGGTAGCTGGCTCACCGATACTTTGAGCAGCTACA 233611 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||||||||||| || || Sbjct 233612 ACGCCAACCATTTCACCAGG 233631 >seq78 Length=1347436 Score = 118 bits (130), Expect = 3e-21 Identities = 334/506 (66%), Gaps = 28/506 (6%) Strand=Plus/Minus Query 133339 GATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATAC 133398 |||||| ||||||||| || || || || || ||||||||||| ||||| ||| | Sbjct 284867 GATGGAGAATATCCATGCTGAGACTTACTCCTTACTTATTGATACTTATATCAAGGATGC 284808 Query 133399 CGTCCAGAAGC--ACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAA 133456 | || || || | ||| | || ||| | ||||||||||||| ||||| Sbjct 284807 --TAAGGAGGCTAACTTCTTGTTCCATGCTATTGATAACATTCCTTGTATTAAGAAGAAG 284750 Query 133457 TCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTT 133516 |||||||||| | | |||||| || | | | | |||||| ||||||||| Sbjct 284749 GCTGACTGGGCCCTAACTTGGATCTCTGATGATCAATCTACCTTTGCTGAGCGTCTCGTT 284690 Query 133517 GCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCT-CTATTTTTTGGCT 133575 ||||| |||| || ||||| || || ||| |||| | || |||| ||| |||||| | Sbjct 284689 GCTTTCGCTGCTGTCGAGGGTATCTTCTTCTCTGGTTCATT-TGCTAGTATCTTTTGGTT 284631 Query 133576 TAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACG- 133634 || ||||||||| || | ||||| || ||| ||||| || | ||||| | || | Sbjct 284630 GAAGAAGCGTGGTCTTATGCCTGGTTTGACTTTCTCTAATGAGTTGATTTCTCGTGATGA 284571 Query 133635 AGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATTAGAGCGACC-ACTCAAA 133693 ||||| | ||||| || || || ||| ||| || | || ||| |||| Sbjct 284570 AGGCA-TGCACACTGATTTCGCTTGTTTGCTT---------TTTG-GCCACCTTGTCAAC 284522 Query 133694 AAGAATAAGA---------TTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAGGTTGAA 133744 | ||||| ||||| | ||||||| ||||| || | ||||| ||| Sbjct 284521 AGACCTAAGAAGTCTGTTGTTGAAAAGATTATTACTGAAGCTGTCGGTATTGAAAAGGAA 284462 Query 133745 TTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTGATGCAGCGT 133804 || | | | ||| |||| || || | |||| ||||||| | ||| ||| | Sbjct 284461 TTCTTGACTGATGCCTTGCCATGTAGTCTTCTTGGAATGAATGCTAAGCTCATGTGTCAA 284402 Query 133805 TATATTGAATTTGTAGCTGACAGATT 133830 || ||||| ||||| ||||||||||| Sbjct 284401 TACATTGAGTTTGTCGCTGACAGATT 284376 >seq90 Length=207308 Score = 89.7 bits (98), Expect = 2e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 || ||||| | |||||||||||||||||||||||| |||||||| | ||||| || ||| Sbjct 33432 GCTCCGTGGGCAATCATACAATCACGCTCCATTTCTCCGAAACGCAATCCACCGTCACGA 33491 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAG 251573 | |||||||| ||||||| | ||||| Sbjct 33492 GATCTACCCTCCACAGGCTGTCTGGTGAG 33520 >seq100 Length=794248 Score = 84.2 bits (92), Expect = 6e-11 Identities = 117/163 (72%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 |||||| | ||||| | || ||||||||||| || || | ||| |||||||||||| Sbjct 449992 AGCACCATATGCAATAACGCAGTCACGTTCCATCTCTCCGAGACGAAGACCACCATCACG 449933 Query 233332 TGACCTACCCTGGACTGT---TTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATA 233388 || | ||| | |||| ||||||||| ||||| | || |||||| | |||| Sbjct 449932 AGATCGACCTT---CTGTGGGTTGACGAGTCAAAACTGCTCGTGGACCTCTTGGACGAGC 449876 Query 233389 ATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAA 233431 || ||||| || ||||||||||||| || | ||||||| Sbjct 449875 ATGCATTTTGTCCATAACCATATGCTTAAGCTTTTGATAATAA 449833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814469627942