Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq155 226 8e-54
seq79 131 5e-25
seq78 118 3e-21
seq90 89.7 2e-12
seq100 84.2 6e-11
>seq155
Length=566151
Score = 226 bits (250), Expect = 8e-54
Identities = 576/867 (66%), Gaps = 17/867 (2%)
Strand=Plus/Minus
Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCTACAATCTCACA 155647
||||| || |||||||| || || ||||| | | | || |||| ||| || ||
Sbjct 482876 ATAGAGGCGAGATTACAAACAGCGGTCTCATCAGGAGACGAA-TATTGTACTATTTCGGT 482818
Query 155648 GCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGC 155707
|||| || || || || ||||| | ||| |||||||| || || | ||| || ||
Sbjct 482817 ACACAAATTTGACGATTTAATTGTGCCAAGATTATTCTGGTTTGACTTCCGGTTGCATGC 482758
Query 155708 ATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCA 155767
||| || ||||| || |||| | || ||||| |||||||| || || ||| | |||
Sbjct 482757 ATCTTTATATAGCATAAATGGATTACCAGTCTCGATCTGTGCTTCTAGTATCGCAAACCA 482698
Query 155768 GAGGTCACGGGCATTAA-TTTGC----TTGTTGTATCTGCCTTCCGACTCATATTTCATA 155822
|| | |||| |||| ||||| |||| | || | ||||| |||||| |
Sbjct 482697 AAGCTTCTGGGCTTTAACTTTGCGCAATTGTCG-ATTTTCCTTC----TCATATCGATTG 482643
Query 155823 TACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAA 155882
|| | || | | || || || ||| ||| || ||||| || || ||
Sbjct 482642 TATAACGCTTCAAATTCATCTCCATAAACATCTGCCAAGCCAGGTGCCTGGTCATTAGAA 482583
Query 155883 AACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATA 155942
|| || |||| || |||| || || || |||||| | ||| ||| | |
Sbjct 482582 AAAAGACACCATTCTTCATTATCGTGGACTTTCTTCATAAACAAATCCGGGATCCAGAGA 482523
Query 155943 GCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAG 156002
|| || || || || | || | |||||| | ||| || || ||||| | ||||||
Sbjct 482522 GCGTAAAATAGATCTCGAGCTCTCAGCTCCTCTTTGCCATGGTTTTTCCGCAAGTCTAAG 482463
Query 156003 AATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG 156062
|||| |||||| ||| || || | ||| ||||||||| |||| || ||||
Sbjct 482462 AATTGGAATATATCACCATGCCAAGGTTCTAAATAAATAGCAAAAGCACCAGGCCGCTTG 482403
Query 156063 ---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119
|| || ||||| |||||||||||||| |||||| | || | || ||| || | |||
Sbjct 482402 TTTCCGCCTTGATCGACATACCGAGCAGTATTATTGTAAACTCGTAACATTGGCACAATT 482343
Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179
|| || ||||| |||||| |||| ||||| || |||| || |||| |||||| | |
Sbjct 482342 CCGTTCGAAGTTCCATTGCTTCCAGCAATATACGTTCCAGTGGAACGAATATTATGTACA 482283
Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239
|| || ||||| ||||| | |||||| || || || ||||| | |||| | ||
Sbjct 482282 TGAAGGCCAATTCCACCGGCAGTTTTAGATATCATCGCACAATCCTTCAAGGTATCGTAA 482223
Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299
||||| || |||||||||||| ||| | | || | |||| || || ||||||
Sbjct 482222 ATACCCTCGATAGAATCATCTCTCATAGCCACTAAAAAGCAAGACGATAGTTGAGGATTG 482163
Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAA 156359
||||| |||| || |||| || |||| |||||| | || || || | |||||| ||
Sbjct 482162 GGTGTACCAGAATTAAATAAAGTTGGTGAAGCATGAGTGAAGTATTTTTCAGACAT-CAA 482104
Query 156360 TCG-TATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCAT 156418
||| ||||| || | | ||| || || | ||||| |||| | || || |||||
Sbjct 482103 TCGATATGTTTCTATCACCTTTGGAATATCATTTCCGTGGATACCCACAGCCACTCTCAT 482044
Query 156419 CCACATATGCTGAGGACGCTCTACAAT 156445
|||| || || || | ||| || ||
Sbjct 482043 TAACATCTGTTGGGGCCTCTCGACGAT 482017
>seq79
Length=299291
Score = 131 bits (144), Expect = 5e-25
Identities = 578/907 (64%), Gaps = 11/907 (1%)
Strand=Plus/Minus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || ||||| |||||||||| ||| ||| ||||| || || | || | || ||
Sbjct 118976 GTACTCGACAATTTCACAGCACAAGTTGGAAGATTTGATAGTACCCAGGTTTTGTTGATT 118917
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
| || |||||||||||||||||||| || ||| | ||| | || ||||| | || ||
Sbjct 118916 ACTCTTGCTGTTACAAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTTTGGGC 118857
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCT--GCCTTCC 155807
|| || || |||||| | | || || || || || || || ||||||
Sbjct 118856 CTCAAGGATAGCATACCAGAGCTTCTGAGCCTTGATAG--TTCTTCTACCTTTGCCTTCT 118799
Query 155808 GACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867
||||| || ||| || | | || || || || || || |||||
Sbjct 118798 TTTTCATACTTTTCATAGAGGGCAACAAATTCGTCTCCATAGACCTCGTCCAAACCAGGA 118739
Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACA 155927
|||| || ||||| | || | |||| | ||| | | || | || ||| || |
Sbjct 118738 CACTCATTAGGGCACATCAAAGTCCAATCCTCGTTAGCCTTGACTCTCTTCATGAACAAG 118679
Query 155928 TCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCT-CATCGCCGTGATT 155986
|| ||||| || |||| | || || || |||| || | | ||||| ||
Sbjct 118678 TCGGGGATCCAAAGGGCCAAGAACAAATCTCTGGCACG-GACTTCTTCCTTACCGTGGTT 118620
Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046
||| || | || | |||||| || ||| || ||||||| ||||| || ||
Sbjct 118619 CTTTCGCAAGTCGATGAATTCAAAAACATCGTCGTGCCAAGGCTCCAAGTACATGGCGAA 118560
Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103
| ||| |||||| ||||| || || ||||| | |||||| || ||||| || |
Sbjct 118559 AGCACCTGGTCTCTTGTTACCACCTTGGTCAACATATCTAGCAGTGTTGTTGAAAACTCT 118500
Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163
| |||||| | |||||| || ||||| || || || ||| ||||| ||||||| |
Sbjct 118499 CAACATAGGGACAATACCGTTAGAAGTACCGTTAGTACCGGCAATATAGGAACCAGTGGC 118440
Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTC 156223
|| | ||| || ||| | ||||||||||||| | || || || || ||
Sbjct 118439 ACGGATATTGTGGATACTCAAACCAATACCACCTGCAGACTTCGAGATCAAGGCACAGGT 118380
Query 156224 CTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGA 156283
||| | ||||| | ||||| ||||| || ||||| | ||| || | | || ||
Sbjct 118379 CTTCAAAGTATCATAGATACCCTCAATGGAGTCATCCTTCATGTTTACCAAGAAACAAGA 118320
Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343
| ||| || || || ||||| ||| | | ||||| | |||||| |||| ||
Sbjct 118319 CGACATTTGTGGCTTGGGAGTACCAGCATTGTACAAAGTAGGAGAAGCATGAGTAAAGTA 118260
Query 156344 CTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACA 156403
||| | ||||| |||| ||| || || | ||| ||| | | || || ||||
Sbjct 118259 CTTTTGTGACATGTAATTGTAAGTTTCAATGGCCTTGGCAATGTCCGCGCCATGGATACC 118200
Query 156404 GATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAG 156463
| || || ||||| |||||| ||||| | ||| |||| ||| | || ||
Sbjct 118199 AACAGCTACTCTCATGATCATATGTTGAGGTCTCTCAGCAATTTTTCCGTTGATCTTGAG 118140
Query 156464 AAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA-ATCAAACAGAAAATCACGGTTGT 156522
| ||| | | ||||| || || || ||||| || | || || |||||||| | ||
Sbjct 118139 CAAGTAAGATCTTTCCAAGGTCTTGAAACCGAAGTAGTTGTAAGAG-AAATCACGATCGT 118081
Query 156523 AATCAAT 156529
| ||||
Sbjct 118080 ATACAAT 118074
Score = 111 bits (122), Expect = 5e-19
Identities = 109/140 (78%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | |||||| |||||| | || ||||| |||||| | |||||||||
Sbjct 233495 AGAATTTCCTTGAGACGGGGTACACCAAGAGTGACGTT---CTTGGATGACACACCAGCA 233551
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
||||||||||||||| || | ||| |||| ||||||||| |||||||| || || |
Sbjct 233552 TAGTGGAAAGTATTCAATGTCATTTGGGTAGCTGGCTCACCGATACTTTGAGCAGCTACA 233611
Query 301933 ATACCAACCATTTCTCCTGG 301952
| ||||||||||| || ||
Sbjct 233612 ACGCCAACCATTTCACCAGG 233631
>seq78
Length=1347436
Score = 118 bits (130), Expect = 3e-21
Identities = 334/506 (66%), Gaps = 28/506 (6%)
Strand=Plus/Minus
Query 133339 GATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATAC 133398
|||||| ||||||||| || || || || || ||||||||||| ||||| ||| |
Sbjct 284867 GATGGAGAATATCCATGCTGAGACTTACTCCTTACTTATTGATACTTATATCAAGGATGC 284808
Query 133399 CGTCCAGAAGC--ACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAA 133456
| || || || | ||| | || ||| | ||||||||||||| |||||
Sbjct 284807 --TAAGGAGGCTAACTTCTTGTTCCATGCTATTGATAACATTCCTTGTATTAAGAAGAAG 284750
Query 133457 TCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTT 133516
|||||||||| | | |||||| || | | | | |||||| |||||||||
Sbjct 284749 GCTGACTGGGCCCTAACTTGGATCTCTGATGATCAATCTACCTTTGCTGAGCGTCTCGTT 284690
Query 133517 GCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCT-CTATTTTTTGGCT 133575
||||| |||| || ||||| || || ||| |||| | || |||| ||| |||||| |
Sbjct 284689 GCTTTCGCTGCTGTCGAGGGTATCTTCTTCTCTGGTTCATT-TGCTAGTATCTTTTGGTT 284631
Query 133576 TAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACG- 133634
|| ||||||||| || | ||||| || ||| ||||| || | ||||| | || |
Sbjct 284630 GAAGAAGCGTGGTCTTATGCCTGGTTTGACTTTCTCTAATGAGTTGATTTCTCGTGATGA 284571
Query 133635 AGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATTAGAGCGACC-ACTCAAA 133693
||||| | ||||| || || || ||| ||| || | || ||| ||||
Sbjct 284570 AGGCA-TGCACACTGATTTCGCTTGTTTGCTT---------TTTG-GCCACCTTGTCAAC 284522
Query 133694 AAGAATAAGA---------TTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAGGTTGAA 133744
| ||||| ||||| | ||||||| ||||| || | ||||| |||
Sbjct 284521 AGACCTAAGAAGTCTGTTGTTGAAAAGATTATTACTGAAGCTGTCGGTATTGAAAAGGAA 284462
Query 133745 TTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTGATGCAGCGT 133804
|| | | | ||| |||| || || | |||| ||||||| | ||| ||| |
Sbjct 284461 TTCTTGACTGATGCCTTGCCATGTAGTCTTCTTGGAATGAATGCTAAGCTCATGTGTCAA 284402
Query 133805 TATATTGAATTTGTAGCTGACAGATT 133830
|| ||||| ||||| |||||||||||
Sbjct 284401 TACATTGAGTTTGTCGCTGACAGATT 284376
>seq90
Length=207308
Score = 89.7 bits (98), Expect = 2e-12
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|| ||||| | |||||||||||||||||||||||| |||||||| | ||||| || |||
Sbjct 33432 GCTCCGTGGGCAATCATACAATCACGCTCCATTTCTCCGAAACGCAATCCACCGTCACGA 33491
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAG 251573
| |||||||| ||||||| | |||||
Sbjct 33492 GATCTACCCTCCACAGGCTGTCTGGTGAG 33520
>seq100
Length=794248
Score = 84.2 bits (92), Expect = 6e-11
Identities = 117/163 (72%), Gaps = 6/163 (4%)
Strand=Plus/Minus
Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331
|||||| | ||||| | || ||||||||||| || || | ||| ||||||||||||
Sbjct 449992 AGCACCATATGCAATAACGCAGTCACGTTCCATCTCTCCGAGACGAAGACCACCATCACG 449933
Query 233332 TGACCTACCCTGGACTGT---TTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATA 233388
|| | ||| | |||| ||||||||| ||||| | || |||||| | ||||
Sbjct 449932 AGATCGACCTT---CTGTGGGTTGACGAGTCAAAACTGCTCGTGGACCTCTTGGACGAGC 449876
Query 233389 ATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAA 233431
|| ||||| || ||||||||||||| || | |||||||
Sbjct 449875 ATGCATTTTGTCCATAACCATATGCTTAAGCTTTTGATAATAA 449833
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471814469627942
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