Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq90 122 8e-23 seq32 116 3e-21 seq111 104 2e-17 >seq90 Length=207308 Score = 122 bits (134), Expect = 8e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||| || || | || || || |||||||| || || || ||||| || || | Sbjct 159292 ACGATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGAGGTTGAGTCT 159233 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||||| | || | || || |||||||||||||| || ||||| || || ||| Sbjct 159232 TCCGACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGAT 159173 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 |||||||||||||||||||| || || || || ||||| | | | || ||||| Sbjct 159172 CAACAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACTCTTTCTGATTAC 159113 Query 24881 AACATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||||| || || || ||| Sbjct 159112 AACATCCAAAAGGAGTCTACTCTCCAC 159086 >seq32 Length=396137 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || ||||| || || || || || || || | || Sbjct 380977 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAGTCTTCC 380918 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| || || |||||||||||| || || || || || || || Sbjct 380917 GACACCATCGACAACGTTAAGACCAA-GATCCAAGACAAGGAGGGCATTCCCCCAGACCA 380859 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| |||||||| || || || || || || |||||| |||| | | || || || || Sbjct 380858 ACAGCGTTTGATTTTCGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTTCCGACTACAA 380799 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| |||||||| || || || ||||| || | || |||| || || Sbjct 380798 CATCCAAAAGGAGTCCACTCTCCACTTAGTCCTTCGTCTGCGTGGTGG 380751 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || ||||| || || || |||||||| ||| | || Sbjct 381205 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAAGTTGAATCTTCC 381146 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || || | ||| || || |||||||||||| || || || || || || || Sbjct 381145 GACACCATCGATAATGTTAAGACCAA-GATCCAAGACAAGGAGGGTATTCCCCCAGACCA 381087 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| |||||||| || || || || || || |||||| | | | || ||||| || Sbjct 381086 ACAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTTTCTGATTACAA 381027 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| ||||| ||||| || || |||||||| Sbjct 381026 CATCCAAAAAGAATCCACTCTCCACTTGGT 380997 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || ||||| || || || || ||||| || || | | Sbjct 380749 ATGCAAATCTTTGTCAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCT 380690 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || || || |||||||||||| || || || || || || || Sbjct 380689 GACACCATCGACAACGTCAAGACCAA-GATCCAAGACAAGGAGGGCATTCCCCCAGACCA 380631 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||| | ||||| || || || ||| |||| || |||| | | || || || || Sbjct 380630 ACAACGTCTTATCTTCGCTGGTAAGCAGTTGGAAGACGGCAGAACCCTCTCTGACTACAA 380571 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || |||||||| Sbjct 380570 CATCCAGAAGGAGTCCACCCTCCACTTGGT 380541 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || ||||| ||||| || ||||||||||| | | Sbjct 381433 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAGACTATCACTCTCGAAGTAGAGTCTTCT 381374 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || || | ||| || || ||| || || || || || || || || || || Sbjct 381373 GACACCATCGATAATGTTAAGACCAA-GATTCAGGATAAGGAGGGTATTCCCCCAGACCA 381315 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | | |||||||| || || || || |||||| |||| | || || || || Sbjct 381314 ACAAAGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGCAGAACTCTTTCTGACTACAA 381255 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 |||||||||||| || || || ||| Sbjct 381254 CATTCAAAAGGAGTCTACTCTCCAC 381230 >seq111 Length=751517 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || ||||| || || || ||||| || || | ||||||| | || | Sbjct 299045 AAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCATTGACAAT 299104 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| |||||||| || || |||||||||||| | ||||| Sbjct 299105 GTCAAGACCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAACAACGTCTTATCTTC 299164 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || || || || ||| |||| | | || || || ||||| |||||||| || Sbjct 299165 GCTGGTAAGCAACTCGAAGATGGCAGAACCCTTTCTGACTACAACATCCAAAAGGAGTCT 299224 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||| | || | || ||| | || || Sbjct 299225 ACTCTTCACCTTGTCCTCCGTTTGAGAGGTGG 299256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896666462480