Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq32 136 3e-27
>seq32
Length=396137
Score = 136 bits (150), Expect = 3e-27
Identities = 162/217 (75%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||| || || |||||||||||||| ||||| ||||| | || || ||
Sbjct 380990 ACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCC 381049
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| |||||||| || ||||| | ||||| | || || || || ||||||||||| ||
Sbjct 381050 ATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTT 381109
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| || || || || ||| | || | ||||| ||| ||| ||||| ||||| |
Sbjct 381110 GTCTTG-GATCTTGGTCTTAACATTATCGATGGTGTCGGAAGATTCAACTTCGAGAGTGA 381168
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || || ||||| ||||| || || || || |||||
Sbjct 381169 TGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 381205
Score = 136 bits (150), Expect = 3e-27
Identities = 162/217 (75%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | ||||| || || || ||||| ||||| || || | | || ||
Sbjct 381446 ACGAAGGACGAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCC 381505
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| |||||||| ||||||||| | || | |||||| || || || ||||||||||| ||
Sbjct 381506 ATCCTCGAGTTGCTTGCCAGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATACCCTCCTT 381565
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| || || || |||||| | || | ||| |||||| ||| || ||||| || |
Sbjct 381566 GTCTTG-GATCTTGGTCTTGACATTGTCAATAGTATCAGAAGATTCGACCTCAAGGGTAA 381624
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||| |||||||| ||||| || || || || |||||
Sbjct 381625 TAGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 381661
Score = 129 bits (142), Expect = 5e-25
Identities = 161/218 (74%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||| || || |||||||||||||| ||||| ||||| | || || |||
Sbjct 381674 ACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACC 381733
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| || ||||| || ||||| | ||||| | || || || || |||||||| || ||
Sbjct 381734 GTCTTCCAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTT 381793
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| ||| || || ||||| | || | ||||||||| || || |||||||| |
Sbjct 381794 GTCTTG-AATCTTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCAAGAGTGA 381852
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
| || || ||||| | ||| || || || || ||||||
Sbjct 381853 TGGTCTTACCAGTAAGGGTCTTTACGAAGATTTGCATT 381890
Score = 114 bits (126), Expect = 1e-20
Identities = 157/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | || || || || || ||||||||||| || || | || || |
Sbjct 381218 ACGAAGGACGAGGTGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTGCC 381277
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| |||||||| || |||||| | || | |||||| || || || ||||||||||| ||
Sbjct 381278 ATCCTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGGGGAATACCCTCCTT 381337
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|| || ||| || || || ||| | || | ||||||||| |||||||| ||||| |
Sbjct 381338 ATCCTG-AATCTTGGTCTTAACATTATCGATGGTGTCAGAAGACTCTACTTCGAGAGTGA 381396
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||| || ||||| | || || || || || |||||
Sbjct 381397 TAGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 381433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385218420653406
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |