Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq155 194 4e-44 seq79 123 6e-23 seq78 100 7e-16 >seq155 Length=566151 Score = 194 bits (214), Expect = 4e-44 Identities = 569/865 (66%), Gaps = 25/865 (3%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||| | ||| ||||||||| | | ||||| ||| | ||| ||| | Sbjct 481963 TATTTTGGGTACAAGACTCTTGAAAGGTCGTATTTGCTTAAAATGTTCGGCAGAATCGTC 482022 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATT--A 110421 || | || ||||| ||||| | | || || | ||||| || ||| |||||||| | Sbjct 482023 GAGAGGCCCCAACAGATGTTAATGAGAGTGGCTGTGGGTATCCACGGAAATGATATTCCA 482082 Query 110422 AAGCTGTTATTGAATGTTAT-GATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCT 110480 ||| || || ||| ||| ||| || ||||| | | | ||||||| | || Sbjct 482083 AAGGTGATA--GAAACATATCGATTGATGTCTGAAAAATACTTC-ACTCATGCTTCACCA 482139 Query 110481 ACCCTATTTAACGCAGGAACT---AATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGA 110537 || ||||||| | || || ||| || || | ||||||||| | | | Sbjct 482140 ACTTTATTTAATTCTGGTACACCCAATCCTCAACTATCG---TCTTGCTTTTTAGTGGCT 482196 Query 110538 ATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCT 110597 || | ||||||||||| || |||||||| ||| | | || || ||| | || ||| Sbjct 482197 ATGAGAGATGATTCTATCGAGGGTATTTACGATACCTTGAAGGATTGTGCGATGATATCT 482256 Query 110598 AAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATC 110657 |||| | || |||||||| |||| || ||| ||||||| || | ||| | |||| Sbjct 482257 AAAACTGCCGGTGGAATTGGCCTTCATGTACATAATATTCGTTCCACTGGAACGTATATT 482316 Query 110658 GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACT 110717 || | || || |||| | ||| |||| ||||||||| |||| | ||| | ||| Sbjct 482317 GCTGGAAGCAATGGAACTTCGAACGGAATTGTGCCAATGTTACGAGTTTACAATAATACT 482376 Query 110718 GCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAA 110774 || ||||| ||||||| || ||| | ||| | |||||||| ||| | ||| Sbjct 482377 GCTCGGTATGTCGATCAAGGCGGAAACAAGCGGCCTGGTGCTTTTGCTATTTATTTAGAA 482436 Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAA 110834 ||||||||| |||||||| |||||||||| | || ||||| || || || || Sbjct 482437 CCTTGGCATGGTGATATATTCCAATTCTTAGACTTGCGGAAAAACCATGGCAAAGAGGAG 482496 Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894 | ||||| || ||| ||||||| || | ||||| | ||||| || ||||| || Sbjct 482497 CTGAGAGCTCGAGATCTATTTTACGCTCTCTGGATCCCGGATTTGTTTATGAAGAAAGTC 482556 Query 110895 CAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTA 110954 || || |||| |||| |||| | | | | | | | ||||| | | ||||| Sbjct 482557 CACGATAATGAAGAATGGTGTCTTTTTTCTAATGACCAGGCACCTGGCTTGGCAGATGTT 482616 Query 110955 TATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAA----GGCAAGTTTCG 111010 |||||| | || ||||||| | ||| | |||||| || ||| | ||| || || Sbjct 482617 TATGGAGATGAATTTGAAGCGTTATACAATCGATATGAGAAGGAAAATCGACAA-TTGCG 482675 Query 111011 CAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGG 111070 || || || ||| || | |||||||| || || ||| |||| | || ||||| Sbjct 482676 CA---AAGTTAAAGCCCAGAAGCTTTGGTTTGCGATACTAGAAGCACAGATCGAGACTGG 482732 Query 111071 AACTCCTTATATTTTGTATAAAGAT-CATATTAATCGCAAATCTAATCAAATGAATTTAG 111129 | ||| | ||| | ||||||||| ||| || || || || || || | ||| | | Sbjct 482733 TAATCCATTTATGCTATATAAAGATGCAT-GCAACCGGAAGTCAAACCAGAATAATCTTG 482791 Query 111130 GAACAATTAAGTCTAGTAATTTGTG 111154 | |||||||| || |||||||| Sbjct 482792 GCACAATTAAATCGTCAAATTTGTG 482816 >seq79 Length=299291 Score = 123 bits (136), Expect = 6e-23 Identities = 332/500 (66%), Gaps = 11/500 (2%) Strand=Plus/Plus Query 110667 AAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATAT 110726 || ||| |||| | || |||| || ||||| ||||| |||||| ||||||| | |||| Sbjct 118467 AACGGTACTTCTAACGGTATTGTCCCTATGTTGAGAGTTTTCAACAACACTGCTAGATAT 118526 Query 110727 GTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCAT 110783 || | ||||||||| |||||| || | || || || || | || |||||||| Sbjct 118527 GTTGACCAAGGTGGTAACAAGAGACCAGGTGCTTTCGCCATGTACTTGGAGCCTTGGCAC 118586 Query 110784 TCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCA 110843 ||| | ||||||||| | || | || || || || || |||||| | || Sbjct 118587 GACGATGTTTTTGAATTCATCGACTTGCGAAAGAACCACGGTAAGGAAGAAGTCCGTGCC 118646 Query 110844 CGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAAT 110903 | ||||| || | || | ||||| | || || |||||||| | || | | || Sbjct 118647 AGAGATTTGTTCTTGGCCCTTTGGATCCCCGACTTGTTCATGAAGAGAGTCAAGGCTAAC 118706 Query 110904 G-GCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAA 110962 | | || ||| || | ||||| ||| || | ||||||| | || || |||||| | Sbjct 118707 GAGGAT-TGGACTTTGATGTGCCCTAATGAGTGTCCTGGTTTGGACGAGGTCTATGGAGA 118765 Query 110963 AGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCC 111022 || |||| | ||| || ||||| ||||||||||||||||| | | || || | | Sbjct 118766 CGAATTTGTTGCCCTCTATGAAAAGTATGAAAAAGAAGGCAAAGGTAG--AAGAACTATC 118823 Query 111023 A--GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGG-AACTCCTTA 111079 | ||||| | || |||| |||||||| | ||| ||| ||||| ||| |||| Sbjct 118824 AAGGCTCAGAAGCTCTGGTATGCTATCCTTGAGGCCCAAACTGAGACTGGTAACCCCTT- 118882 Query 111080 TATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAA 111139 || | || || ||| | ||| |||| ||||||| || | || || || || Sbjct 118883 CATGCTCTACAAGGATGCTTGTAACAGCAAGAGTAATCAACAAAACCTGGGTACTATCAA 118942 Query 111140 GTCTAGTAATTTGTGCTGTG 111159 ||| || |||||||||| Sbjct 118943 ATCTTCCAACTTGTGCTGTG 118962 >seq78 Length=1347436 Score = 100 bits (110), Expect = 7e-16 Identities = 456/717 (64%), Gaps = 11/717 (2%) Strand=Plus/Minus Query 131465 ATGTATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGAT 131524 ||||| ||| || ||| || | |||||||||| ||||||||| ||| | || ||| Sbjct 285094 ATGTACAAGCAAGCTGAGGCCTCTTTCTGGACTGCTGAAGAGATTGATCTTGGAAAGGAT 285035 Query 131525 ATTGATGATTGGGAAAAA----TTAACCTTGAATGAAAAAGATTTTGTTTCCAAAGTTCT 131580 ||| ||| |||||| | |||| ||| ||| | | ||| | || || || Sbjct 285034 ATTAGTGACTGGGAACACCGTCTTAATGATGA-TGAGAGATTCTTTATCTCTCGTGTGCT 284976 Query 131581 TGCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCA 131640 || ||||| || | ||||| ||||| | ||| || |||||| | ||| | Sbjct 284975 CGCTTTCTTTGCTGCCTCCGATGGTATTGTCAATGAGAACCTTGTTGAGAGATTCTCTGG 284916 Query 131641 AGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCC--GCTGTTGAATCT 131698 || | | |||||||| | | | |||||| ||| ||| | | || |||| Sbjct 284915 TGAGGTCCAGATTCCTGAGGCCAAGTGTTTCTACGGATTCCAAATCATGATGGAGAAT-- 284858 Query 131699 ATTCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAA 131758 || ||| |||| || || ||| | ||||| | | | | || ||| | || Sbjct 284857 ATCCATGCTGAGACTTACTCCTTACTTATTGATACTTATATCAAGGATGCTAAGGAGGCT 284798 Query 131759 AATAAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCT 131818 || || || ||||| | |||| ||||| ||||| ||||| || || ||||| Sbjct 284797 AACTTCTTGTTCCATGCTATTGATAACATTCCTTGTATTAAGAAGAAGGCTGACTGGGCC 284738 Query 131819 ATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGT 131878 | | ||||| |||||| ||| ||| || | || || ||||| ||| | Sbjct 284737 CTAACTTGGATCTCTGATGATCAATCTACCTTTGCTGAGCGTCTCGTTGCTTTCGCTGCT 284678 Query 131879 GTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGA 131938 || || ||||| ||||| || ||| | || | |||||||||| | ||||||||||| Sbjct 284677 GTCGAGGGTATCTTCTTCTCTGGTTCATTTGCTAGTATCTTTTGGTTGAAGAAGCGTGGT 284618 Query 131939 TTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACT 131998 | |||||||| | | || || ||| | || || || | ||||||| |||| ||| Sbjct 284617 CTTATGCCTGGTTTGACTTTCTCTAATGAGTTGATTTCTCGTGATGAAGGCATGCACACT 284558 Query 131999 GAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGATGAAAATAATATTAAA 132058 || || ||| || | | | | | ||| | | || | | | | | || || Sbjct 284557 GATTTCGCTTGTTTGCTTTTTGGCCACCTTGTCAACAGACCTAAGAAGTCTGTTGTTGAA 284498 Query 132059 CAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCTTGC 132118 | |||| | ||||| || | ||| || ||||| || | || || || ||||| || Sbjct 284497 AAGATTATTACTGAAGCTGTCGGTATTGAAAAGGAATTCTTGACTGATGCCTTGCCATGT 284438 Query 132119 AATTTGATTGGGATGAATGCTGA-CTCTATGAAGGAGTACATTGAATTCGTTGCTGA 132174 | | | |||| ||||||||| | ||| ||| | |||||||| || || ||||| Sbjct 284437 AGTCTTCTTGGAATGAATGCTAAGCTC-ATGTGTCAATACATTGAGTTTGTCGCTGA 284382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186810275797526