Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq32 122 6e-23
seq90 91.5 1e-13
>seq32
Length=396137
Score = 122 bits (134), Expect = 6e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | ||||| || |||||| |||||||| ||||||||||| ||
Sbjct 381662 ACCACCACGGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGA 381721
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || |||| |||| ||| || || || |||||||||||||| || ||| | ||
Sbjct 381722 AAGAGTACGACCGTCTTCCAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGG 381781
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||| ||||| ||| || || | || | ||| | |||||| || || |
Sbjct 381782 AATACCTTCCTTGTCTTGAATCTT-GGTCTTGACGTTGTCGATGGTGTCAGAAGACTCGA 381840
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| |||| ||||| || ||||| || | || ||||| ||||| |||||
Sbjct 381841 CCTCAAGAGTGATGGTCTTACCAGTAAGGGTCTTTACGAAGATTTGCAT 381889
Score = 114 bits (126), Expect = 8e-21
Identities = 165/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | ||||| || |||||| |||||||| ||||||||||| ||
Sbjct 380978 ACCACCACGGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGA 381037
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || | || || | ||| || || || |||||||||||||| || ||| | ||
Sbjct 381038 AAGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGG 381097
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||| || ||||| || || || | ||||| || | ||||||| ||||| |
Sbjct 381098 AATACCCTCCTTGTCTTGGATCTT-GGTCTTAACATTATCGATGGTGTCGGAAGATTCAA 381156
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| || ||||| || || || || || ||||| ||||||
Sbjct 381157 CTTCGAGAGTGATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCATA 381206
Score = 105 bits (116), Expect = 4e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || ||| | || || || |||||| ||| ||||| |||||||| |||||
Sbjct 380750 ACCACCACGCAGACGAAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 380809
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || | | | || || | ||| || || || |||||||||||||| || ||| | ||
Sbjct 380810 AAGGGTTCTTCCATCCTCAAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGG 380869
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || || ||||| || || || | ||| | ||| | ||||||| || || |
Sbjct 380870 AATGCCCTCCTTGTCTTGGATCTT-GGTCTTAACGTTGTCGATGGTGTCGGAAGACTCGA 380928
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| |||| ||||| || ||||| || | || || || ||||| ||||||
Sbjct 380929 CCTCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCATA 380978
>seq90
Length=207308
Score = 91.5 bits (100), Expect = 1e-13
Identities = 162/234 (69%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | | ||| | || | || ||||| ||| ||||| ||||||||||| |
Sbjct 159061 CACCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCAG 159120
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| || || || |||| || | ||| || || ||||| |||||||| || |||||| | |
Sbjct 159121 AAAGAGTACGACCGTCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGG 159180
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | || || ||||| || || || | |||| ||| | ||||||| || ||
Sbjct 159181 GAATTCCCTCCTTGTCTTGGATCTT-GGTCTTGACATTGTCGATGGTGTCGGAAGACTCA 159239
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753
|| || | ||||| || ||||| || | || || || || || ||||| |||
Sbjct 159240 ACCTCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCATCGTT 159293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328703334990720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |