Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq90 125 7e-24
seq32 123 3e-23
seq111 98.7 1e-15
>seq90
Length=207308
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | || ||||| || || || |||||||| |||||||| || |
Sbjct 159063 CCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGAA 159122
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || || ||| || || || || || ||||| |||||||| || ||||| || ||
Sbjct 159123 AGAGTACGACCGTCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGA 159182
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || ||||| || || ||||| ||| | |||||||| || || ||
Sbjct 159183 ATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGACTCAACC 159242
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || ||||| |||||||| | || || ||||||||||||||
Sbjct 159243 TCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCAT 159289
>seq32
Length=396137
Score = 123 bits (136), Expect = 3e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | || | ||| || |||||||| ||||| |||||||| || |
Sbjct 381663 CCACCACGGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAA 381722
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || || ||| || || || || || || |||||||||||||| || || || ||
Sbjct 381723 AGAGTACGACCGTCTTCCAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGA 381782
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| ||||| || |||||||| || ||||| ||| | ||||| || || || ||
Sbjct 381783 ATACCTTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCGACC 381842
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
|| ||||| ||||| ||||| || | || || ||||| ||||||||| ||
Sbjct 381843 TCAAGAGTGATGGTCTTACCAGTAAGGGTCTTTACGAAGATTTGCATTATG 381893
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | || | ||| || |||||||| ||||| |||||||| || |
Sbjct 380979 CCACCACGGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAA 381038
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | || ||||| || || || || |||||||||||||| || || || ||
Sbjct 381039 AGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGA 381098
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || ||||| || || || || || | |||||||| ||||| ||
Sbjct 381099 ATACCCTCCTTGTCTTGGATCTTGGTCTTAACATTATCGATGGTGTCGGAAGATTCAACT 381158
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|||||||| ||||| ||||| || || || || ||||| ||||||||
Sbjct 381159 TCGAGAGTGATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 381205
Score = 111 bits (122), Expect = 2e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
||| || ||||| |||||||| |||||||||||| || ||| || || || ||
Sbjct 380774 GTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCATCCTCAAGTTG 380833
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
|| || || |||||||||||||| || || || || ||||| || || ||||| || ||
Sbjct 380834 CTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTT 380893
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
|| || ||| | |||||||| || || || || || || ||||| ||||| ||
Sbjct 380894 GGTCTTAACGTTGTCGATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTCTTACCAGT 380953
Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713
| || || ||||| ||||||||
Sbjct 380954 GAGGGTCTTGACGAAGATTTGCAT 380977
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545
|| || | ||| || | |||||||| || || || |||||||||||||||||||| |
Sbjct 381207 CCACCACGGAGACGAAGGACGAGGTGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAA 381266
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
| | | || | || ||||| || || || ||||| || | | || || || || ||
Sbjct 381267 AGAGTTCTGCCA-TCCTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGGGG 381325
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| || || || || ||||| || || || || | ||||| || || || ||
Sbjct 381326 AATACCCTCCTTATCCTGAATCTTGGTCTTAACATTATCGATGGTGTCAGAAGACTCTAC 381385
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|||||||| || || ||||| || | ||| || ||||| ||||||||
Sbjct 381386 TTCGAGAGTGATAGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 381433
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543
|| || || | ||| || | || | ||| || ||||| ||||| || |||||||||||
Sbjct 380520 TTACCGCCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 380579
Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603
| ||| ||| || | ||| || || || || || | ||| || || || ||
Sbjct 380580 GAGAGGGTTCTGCCGTCTTCCAACTGCTTACCAGCGAAGATAAGACGTTGTTGGTCTGGG 380639
Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663
|| ||||| || || ||||| || || ||||| ||| | ||||| || || ||
Sbjct 380640 GGAATGCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCG 380699
Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| ||||| || ||||| || ||||| | ||| || || || ||||||||
Sbjct 380700 ACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATTTGCAT 380749
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | |||||||| || || || |||||||| |||||||||||
Sbjct 381435 CCACCACGGAGACGAAGGACGAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAG 381494
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | || ||||| || ||||| ||||| || | | || || || || ||
Sbjct 381495 AGAGTACGGCCATCCTCGAGTTGCTTGCCAGCAAAGATGAGTCTTTGTTGGTCTGGGGGA 381554
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || ||||| || || ||||| ||| | || || || ||||| ||
Sbjct 381555 ATACCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCAATAGTATCAGAAGATTCGACC 381614
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || ||||| || || || || || || || ||||| ||||||||
Sbjct 381615 TCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 381661
>seq111
Length=751517
Score = 98.7 bits (108), Expect = 1e-15
Identities = 170/243 (70%), Gaps = 3/243 (1%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| ||||| | || | || ||||| || || || |||||||| ||||||||||| |
Sbjct 299256 CCACCTCTCAAACGGAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 299197
Query 134547 ACGG-TGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
| || | || | || ||||| || || || || || || | ||| || ||||| || ||
Sbjct 299196 AGGGTTCTGCCA-TCTTCGAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGGGG 299138
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| ||||| || || || || || ||||| ||| | |||||||| || || ||
Sbjct 299137 AATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCGGAAGACTCGAC 299078
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAAT-TTGCATTTTGTTTTTGT 134724
||||| || ||||| ||||| || | || || |||||| | || | || || |||||
Sbjct 299077 CTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAAACTGTTCCTGTTAGTATTTGT 299018
Query 134725 TCA 134727
||
Sbjct 299017 CCA 299015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505397351298320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |