Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq78 138 9e-28 >seq78 Length=1347436 Score = 138 bits (152), Expect = 9e-28 Identities = 403/610 (66%), Gaps = 22/610 (4%) Strand=Plus/Minus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || |||||| |||| || || | || ||||| || |||||||||||||| |||| || Sbjct 285136 AGATTTGTCTTGTTCCCTATCAAGTACCATGAGATCTGGCAAATGTACAAGCAAGCTGAG 285077 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC-TTAGCACATTGGATTGC 43815 || || || ||||| || ||||| ||||| | || || |||| | ||| | Sbjct 285076 GCCTCTTTCTGGACTGCTGAAGAGATTGATCTTGGAAAGGATATTAGTGACTGGGAACAC 285017 Query 43816 A---TTAAA-ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGA 43871 |||| | | ||| | | ||||| ||| || | || || |||||||| Sbjct 285016 CGTCTTAATGATGATGAGAGATTC--TTTATCTCTCGTGTGCTCGCTTTCTTTGCTGCCT 284959 Query 43872 GCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAG 43931 ||| || || |||||||| || | ||| | || | || || || | || | Sbjct 284958 CCGATGGTATTGTCAATGAGAACCTTGTTGAGAGATTCTCTGGTGAGGTCCAGATTCCTG 284899 Query 43932 AAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACA 43991 | || ||||| || || || ||||| || || ||||| ||| | || | ||| Sbjct 284898 AGGCCAAGTGTTTCTACGGATTCCAAATCATGATGGAGAATATCCATGCTGAGACTTACT 284839 Query 43992 GTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGA--AGCATCGATTGTTTAATGC 44049 | || || ||||| || ||||| |||| | ||| | | || ||||| |||| Sbjct 284838 CCTTACTTATTGATACTTATATCAAGGATGCTAAGGAGGCTAACTTC--TTGTTCCATGC 284781 Query 44050 GATAGA-AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATT 44108 || || |||| | | || ||||| | || || ||||||||||| | ||||| | Sbjct 284780 TATTGATAACATTCCTTGT-ATTAAGAAGAAGGCTGACTGGGCCCTAACTTGGATC---T 284725 Query 44109 CAAATGAT---TCT---TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTT 44162 | ||||| ||| |||| || || || || || || || | ||| || || || | Sbjct 284724 CTGATGATCAATCTACCTTTGCTGAGCGTCTCGTTGCTTTCGCTGCTGTCGAGGGTATCT 284665 Query 44163 TCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGT 44222 |||| || || || ||||| || |||||||| ||||| || ||| | |||||||| | Sbjct 284664 TCTTCTCTGGTTCATTTGCTAGTATCTTTTGGTTGAAGAAGCGTGGTCTTATGCCTGGTT 284605 Query 44223 TGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCT 44282 |||| || || |||||||| || ||||||||||||| | || ||||| ||||| | Sbjct 284604 TGACTTTCTCTAATGAGTTGATTTCTCGTGATGAAGGCATGCACACTGATTTCGCTTGTT 284545 Query 44283 TGTTACTTGG 44292 || | |||| Sbjct 284544 TGCTTTTTGG 284535 Score = 93.3 bits (102), Expect = 3e-14 Identities = 225/332 (68%), Gaps = 18/332 (5%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGT--CAATCGGAAGAAA 19486 |||||||| || |||||||||||||| | || || || || ||| || | || || | Sbjct 1161017 CCCAAAATCGTCAATGGTCCTGAAATGCTCAACAAGTACGTTGGTGGCAGT--GAGGAGA 1160960 Query 19487 ATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGT 19545 || | || |||| |||||||| | ||| | ||| | |||||| | | | Sbjct 1160959 ATATCCGTAACCTGTTCAAAGACGCTGAGGCTGAATACAAA-GAAAAGGGCGACGAGTCT 1160901 Query 19546 TCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCT--- 19602 || | || ||||| || | ||||||||||| || | | ||| |||||||||||| Sbjct 1160900 GCTCTTCATATTATTATCTTCGATGAATTGGATGCTGTGTTTAAACAAAGAGGTTCTCGA 1160841 Query 19603 GGT----GTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658 ||| ||| | || || || | || ||||| ||||| || | || | || || Sbjct 1160840 GGTGATGGTACA-GGTGTTGGCGATAACGTCGTCAACCAACTGCTTGCGAAGATGGATGG 1160782 Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA 19718 ||| | |||||||| || |||| |||||||| ||||| ||| ||| || || || || Sbjct 1160781 TGTCGAGCAACTGAACAACGTTTTGGTTATTGGTATGACCAATCGACGTGATTTGATCGA 1160722 Query 19719 --CAGCGCCTTATTACGACCCGGTCGGTTGGA 19748 | |||| | || || |||||||| || || Sbjct 1160721 TTCTGCGC--TTTTGCGTCCCGGTCGTTTTGA 1160692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455195896830