Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq79 188 9e-43 seq155 113 6e-20 seq43 104 3e-17 seq78 100 4e-16 >seq79 Length=299291 Score = 188 bits (208), Expect = 9e-43 Identities = 914/1433 (64%), Gaps = 43/1433 (3%) Strand=Plus/Minus Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727 ||||||||| ||||| || || ||| ||| | ||||||||| | |||||| || Sbjct 119594 GTTGACAATCTGGAACTCTCCAGCAAGGACTCTACGAGAGTAGATGTTGGATGTGTAAGG 119535 Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 110787 ||||| |||||||| ||||| | |||||| | ||| || || || ||||| || || | Sbjct 119534 CTCAAAACATTCATTGTTACCGAGGATTTGGGAGGTCGAAGCAGTAGGCATAGGAGCAAC 119475 Query 110788 CAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG-- 110845 | |||| ||| | |||||| | || || | ||| ||| | |||| || Sbjct 119474 GAGAAGAGAGTTTCTAAGACCGTGCTTAGCCATCTTCTTCTTAAGAGTAGCCCAATCCCA 119415 Query 110846 TAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGA 110905 ||| | || ||| | | ||||||||||| | || | | || | || || ||| Sbjct 119414 TAGATCAG--TGGGAGTAACATCCCACATGTCGTATTGTAAAAGACCCTTAGAAGCAGGA 119357 Query 110906 GAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGG 110965 || |||||| |||| || |||| || | ||||| | |||| | || | Sbjct 119356 GATCCCTCATAGGTCTCGTAGGCGCCATATTTCTCAGCAAGTTCAATTGAAGATTCTACA 119297 Query 110966 GATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCA 111025 | || || || ||||||||| |||| || |||| | |||||||||| || || Sbjct 119296 GCAGCATGGTAAATGGTTTCAGAGATTTGAATGTTCAATTGCTTGGCTTCAGGAGAGTCG 119237 Query 111026 AATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGT 111085 |||| | ||| || || |||| || | |||||||| || | | |||||||| Sbjct 119236 AATGGCAAACGGAGAGCCATGAAAGCATCAGCTAAACCTTGAATGCCAAGAGCAATAGGT 119177 Query 111086 CTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATG 111142 ||||| || | ||| ||| | ||| ||| || ||||| || ||||||||||| Sbjct 119176 CTGTGACGGAAGTTAC---TTCTCTCAGCCTCCTTTACTGGATAGAAGTTTCTGTCAATA 119120 Query 111143 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAAT----- 111197 | || | ||| | ||||| ||| | | ||| || || || ||| | | Sbjct 119119 ATGACATTCAAGTTTCTAGTAACGGCCTTGGCAACTTCGTGGAGCTTCTCAAAGTTGTAC 119060 Query 111198 CAAAAGTGCGAGTCTCTTCATTG---ACATACTTTGGAAGGGCGATTGATGCCAAATTGC 111254 || ||| | || ||| | ||| | ||||||| | || ||||| || | Sbjct 119059 CATAAG--CCTTCATCATCACTTTCAACAAAAGCAGGAAGGGACAAAGAAGCCAAGTTAC 119002 Query 111255 AAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCT 111314 |||||||| || || | | |||||| | |||||| || ||||||||| | Sbjct 119001 AAACAGCCACTTCTTCAGGAGAAGAGTACTCGACAATTTCACAGCACAAGTTGGAAGATT 118942 Query 111315 TAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGT 111374 | || || |||| || | ||| |||||||| |||| || |||||||||||||||||| Sbjct 118941 TGATAGTACCCAGGTTTTGTTGATTACTCTTGCTGTTACAAGCATCCTTGTAGAGCATGA 118882 Query 111375 AGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGT 111433 |||| | || ||||| || || | | || ||||| | ||| | | || | | || | Sbjct 118881 AGGGGTTACCAGTCTCAGTTTGGGCCTCAAGGATAGCATACCAGAGCTTCTGAGCCTTG- 118823 Query 111434 ACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 111492 | | | | | || | || || || |||||| |||||||| |||| || || Sbjct 118822 ATAGT-TCTTCTACCTTTGCCTTCTTTTTCATACTTTTCATAGAGGGCAACAAATTCGTC 118764 Query 111493 ACC---CACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACC 111549 || ||| |||| | ||| || || | || || | | || ||| | || Sbjct 118763 TCCATAGACCTCGTC---CAAACCAGGACACTCATTAGGGCACATCAAAGTCCAAT--CC 118709 Query 111550 ACCTT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCT 111607 | || ||| || | ||||||||| | ||| || ||||| |||| | || | |||| Sbjct 118708 TCGTTAGCCTTGACTCTCTTCATGAACAAGTCGGGGATCCAAAGGGCCAAGAACAAATCT 118649 Query 111608 CT-ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATC 111666 || ||| || | ||||| | ||| ||||| ||| || || | ||| || | | ||| Sbjct 118648 CTGGCACGGA-CTTCTTCCTTACCGTGGTTCTTTCGCAAGTCGATGAATTCAAAAACATC 118590 Query 111667 CGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGAT 111722 ||||||| ||||| | || | |||| || || || | | ||| |||| | Sbjct 118589 GTCGTGCCAAGGCTCCAAGTACATGGCGAAAGCACCTGGTCTCTTG-TTACCACCTTGGT 118531 Query 111723 TTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGAC 111782 ||||| | || ||| ||| || || | | ||| || | |||||| | || || Sbjct 118530 CAACATATCTAGCAGTGTTGTTGAAAACTCTCAACATAGGGACAATACCGTTAGAAGTAC 118471 Query 111783 CATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATAC 111842 | || || || |||| || | |||| | | || ||||| || ||||||| Sbjct 118470 CGTTAGTACCGGCAATATAGGAACCAGTGGCACGGATATTGTGGATACTCAAACCAATAC 118411 Query 111843 CCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 111902 | || || |||| ||||| ||||| | | | ||| |||||||||| | || | Sbjct 118410 CACCTGCAGACTTCGAGATCAAGGCACAGGTCTTCAAAGTATCATAGATACCCTCAATGG 118351 Query 111903 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCAT 111962 |||| ||||| || | | ||| ||| ||||| || || | || |||||||||| Sbjct 118350 AGTCATCCTTCATGTTTACCAAGAAACAAGACGACATTTGTGGCTTGGGAGTACCAGCAT 118291 Query 111963 TGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTATGTCTCC 112021 || | | || || | || ||| | || ||| ||| ||||| | | ||| || || Sbjct 118290 TGTACAAAGTAGGAGAAGCATGAGT-AAAGTACTTTTGTGACATGTAATTGTAAGTTTCA 118232 Query 112022 AAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACAT 112074 | | | ||||||| | || ||||| || | || || | ||||| ||| Sbjct 118231 ATGGCCTTGGCAATGTCCGCGCCATGGATACCAACAGCTACTCTCATGATCAT 118179 >seq155 Length=566151 Score = 113 bits (124), Expect = 6e-20 Identities = 695/1100 (63%), Gaps = 45/1100 (4%) Strand=Plus/Minus Query 110353 CGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATG 110412 ||| |||| ||| | ||| ||||| || ||||||||||| | ||||| |||| | ||| Sbjct 483783 CGCTTTTGTTCGTAAATAATACATTCCTGTCTTGAGTCCCTTCTTCCAGCCGTAGAAATG 483724 Query 110413 CATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTG 110472 |||| || || ||| | || ||| ||| |||||| | |||||||||||| || Sbjct 483723 CATACTAGTAAGTTTGCCAGTAGTGGGATTTTTCATGAAAATATTCATACTTTGAGACTG 483664 Query 110473 GTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCA 110532 ||||||| | || || || | || |||||||| || | | ||| | | |||||| Sbjct 483663 GTCAATGTATCGACCGCGGTCGGCGGCCATATCGATTATCACTTTCTGGCTCAATTCCCA 483604 Query 110533 AACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACC 110592 | || ||| | | ||| | ||| |||| || || || || ||||| || || Sbjct 483603 GGCCGTCTTATATATCTCCTTCAAATCGCCTGGAATCTCATTAATGTTTTGGATAGAGCC 483544 Query 110593 -CCCCGCCT--TCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAG 110649 | | || | | |||| | | | ||||| ||| | ||| | | || Sbjct 483543 ATCTTGACTAATTATCATG---TGCCTGATATCAGCATTCCACAAACCTAATTGGGCTAG 483487 Query 110650 GTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTA 110709 || | || || | | |||||||| || || || | ||| | || || Sbjct 483486 ATCCCTTACAAGATATTCATTGACAATTTGGAATTCGCCAGAAAGGACCCGTCGAGTATA 483427 Query 110710 GATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGC 110769 || |||| |||| ||||||||| || || || ||| | ||||| | || || || Sbjct 483426 TATATTTGATGTGATTGGTTCAAAACACTCGTTGAAACCAAGAATTTGCGAAGTCGAAGC 483367 Query 110770 TGTTGGCATTGGTGC--CATCAAAAGACTGTTACGAAGACCCTTCTCCTTGAT-GCGTTC 110826 || ||||||||||| || | ||||| || | ||| || ||| || | | Sbjct 483366 GGTGGGCATTGGTGCGACAACTAAAGA--ATTCCTAAGTCCAAACTCGGAAATATCACGC 483309 Query 110827 CTTGAGAACATCCCAGT----------CGTAG--TTGAGCTTGGTTTCACCTTCCCACAT 110874 || || | ||||||| ||| | |||| | | |||| |||||| Sbjct 483308 TTTAAGCTC-TCCCAGTCCCATAAATCCGTCGCCTTGAAATCAGGCTCAC---CCCACAA 483253 Query 110875 GTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTG 110934 || || || | || ||| | || |||||||||||| | | | || || | || | Sbjct 483252 ATCGAATTGCAACATCCCCTTCGAAGCGGGAGAACCCGAATAACTATCGTATGGTCCGTT 483193 Query 110935 GGCTTCAGCCA-ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATAC 110993 ||| || | | || || | ||||| | | || ||||| || |||||||| || Sbjct 483192 TTCTTTGGCTAGCTCCATAGAT-GCCTCGACTGCCGCATGATATATAGTTTCAAATATTT 483134 Query 110994 GAGCATTCATCTCCTTGGCTTCATCTGAATCAAAT-GCGTA-GCGGCACAAAATAAATAC 111051 | |||| | |||||||| || |||||| || || || | | |||| | Sbjct 483133 GCACATTAAGTAATCTGGCTTCAGACGAGTCAAATGGCATACGCAGTTTCATATAAGT-- 483076 Query 111052 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC 111111 ||| || | ||||| || || | | | || ||||||||| || ||||||| | | ||| Sbjct 483075 ATCTGCCAATCCTTGGACTCCGACAGCTATGGGTCTGTGTTTCACATTAGACCTCCTCGC 483016 Query 111112 AGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTT 111171 || || |||||||| ||| |||| |||| ||| |||||| | | || | || Sbjct 483015 AGATTCGACGGGATAGTCATTGATGTCTATGATCTTGTTCAGATTTCTAGCGACTACTTT 482956 Query 111172 TGTGATTTCATGAAGTTTTTCATAATCA----AAAGTGCGA----GT-CTCTTCATTG-- 111220 | | ||||||||| |||||| | ||| | | | | || ||| || | | Sbjct 482955 GGCAACTTCATGAAGCTTTTCAAAGTCATACCATACCTCAACATCGTCCTCGTCGTAGTG 482896 Query 111221 -ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 ||| || |||| | || || || || | ||| |||||||| |||||||| | | Sbjct 482895 TACAAACGTTGGTAACGCTATAGAGGCGAGATTACAAACAGCGGTCTCATCAGGAGACGA 482836 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 || | || ||||| ||||| || || || ||||| || || | ||| || ||||| Sbjct 482835 ATATTGTACTATTTCGGTACACAAATTTGACGATTTAATTGTGCCAAGATTATTCTGGTT 482776 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 |||| |||||| ||||| || || ||||| | || | || ||||| |||||| Sbjct 482775 TGACTTCCGGTTGCATGCATCTTTATATAGCATAAATGGATTACCAGTCTCGATCTGTGC 482716 Query 111400 TTTGAGAATAGCCTTCCAAA 111419 || || || || ||||| Sbjct 482715 TTCTAGTATCGCAAACCAAA 482696 >seq43 Length=391780 Score = 104 bits (114), Expect = 3e-17 Identities = 255/380 (67%), Gaps = 10/380 (3%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||||||||| | ||||||| | || | || || | | ||| | |||| Sbjct 81739 ATCAAGGATATCAGGTCTATTAGTGCCTGCTAGCACGACGACATGATCATCAGAGGCAAA 81798 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT--GGC 11599 |||||||| || ||| | |||||||| || |||||| ||||| | | | | Sbjct 81799 ACCATCCATTTCAACGAGAATTTGATTAAGAGTAGCTTCTCTTTCATCGTGACCACCGCC 81858 Query 11600 ATA----CCACCAGCACTGCGTTGCT-TGCCCACCGCATCAATCTCATCAATGAAGACAA 11654 | | ||||| ||| || ||| | || | ||||||||||||||||| || |||| Sbjct 81859 AAAAGAACCACCTTGACTACGA-GCTCTTCCAATAGCATCAATCTCATCAATAAATACAA 81917 Query 11655 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 ||| || | | || || | |||| ||||| | |||| | ||||| |||| Sbjct 81918 TACTAGGAGCCTCCTTACGAGCTGTAGCAAATAGATCTCTCACCCGGCTAGCACCAACAC 81977 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCA 11773 |||||||||||||||| || | | | |||| || | || ||||| ||| || ||| Sbjct 81978 CAACAAACATCTCCACGAATTCCGAGCCAGA-TACAGAGAAAAATGGTACACCTGCCTCA 82036 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCG 11833 || || ||||| || || | ||||| || ||||| || ||| | |||| || Sbjct 82037 CCAGCTGTGGCTTTAGCAAGTAAAGTCTTACCAGTACCAGGAGGACCAGAAAGAACAGCA 82096 Query 11834 CCTCGGGGGATCTTGGCACC 11853 ||||| |||||||||||||| Sbjct 82097 CCTCGAGGGATCTTGGCACC 82116 >seq78 Length=1347436 Score = 100 bits (110), Expect = 4e-16 Identities = 147/204 (72%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || ||||| || ||||| | ||||| ||||| | ||| ||||| ||||| |||||| Sbjct 284568 CCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAAACCAGGCATAAGACCACGCTTC 284627 Query 122737 TTCAACCAATAAATA-GCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 122795 ||||||||| | ||| ||| ||||| || ||||||||||||||||| ||| || || Sbjct 284628 TTCAACCAAAAGATACTAGCA-AATGAACCAGAGAAGAAGATACCCTCGACAGCAGCGAA 284686 Query 122796 CGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCA---AACCATTTCATTGCCCA 122852 |||| || || || || |||| ||| | ||||| | ||| | | ||||| Sbjct 284687 AGCAACGAGACGCTCAGCAAAGG---TAGATTGATCATCAGAGATCCAAGTTAGGGCCCA 284743 Query 122853 TTTCGCCTTCTTCTCAATACATGG 122876 | |||||||||| |||||| || Sbjct 284744 GTCAGCCTTCTTCTTAATACAAGG 284767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030696833600