Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq79 192 7e-44 seq78 111 2e-19 seq155 95.1 1e-14 seq43 91.5 2e-13 >seq79 Length=299291 Score = 192 bits (212), Expect = 7e-44 Identities = 1095/1735 (63%), Gaps = 37/1735 (2%) Strand=Plus/Plus Query 104231 ATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACA 104290 ||| ||||| | || || | ||||| ||||| | ||||||| | | | || || Sbjct 118179 ATGATCATGAGAGTAGCTGTTGGTATCCATGGCGCGGACATTGCCAAGGCCATTGAAACT 118238 Query 104291 TACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGG 104349 ||| | | ||||| ||| ||| || | ||| || | || || | | ||||||||| Sbjct 118239 TACAATTACATGTCACAAAAGTACTTT-ACTCATGCTTCTCCTACTTTGTACAATGCTGG 118297 Query 104350 TACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAA 104409 ||| || | || |||||||| ||| ||| | | || ||||| ||||| || | Sbjct 118298 TACTCCCAAGCCACAAATGTCGTCTTGTTTCTTGGTAAACATGAAGGATGACTCCATTGA 118357 Query 104410 CGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGG 104469 |||||||||| ||| | | | ||||| ||||| |||| || || |||||||| Sbjct 118358 GGGTATCTATGATACTTTGAAGACCTGTGCCTTGATCTCGAAGTCTGCAGGTGGTATTGG 118417 Query 104470 GATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATC 104529 || ||||| || | | |||| | || |||| || || || ||| || Sbjct 118418 TTTGAGTATCCACAATATCCGTGCCACTGGTTCCTATATTGCCGGTACTAACGGTACTTC 118477 Query 104530 AGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGC 104589 | |||||| | || ||| | | || || ||| ||| || | ||||| | |||| Sbjct 118478 TAACGGTATTGTCCCTATGTTGAGAGTTTTCAACAACACTGCTAGATATGTTGACCAAGG 118537 Query 104590 TGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCA 104645 | || | | || || || |||| | || | ||||| ||||||| ||| | Sbjct 118538 T-GGTAACAAGAGACCAGGTGCTTTCGCCATGTACTTGGAGCCTTGGCACGACGATGTTT 118596 Query 104646 TGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC-GCGATCTC 104704 | || ||| | || ||||| ||||| ||| | || || | | ||||| | ||| | Sbjct 118597 TTGAATTCATCGACTTGCGAAAGAACCACGGTAAGGAAGAAG-TCCGTGCCAGAGATTTG 118655 Query 104705 TTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGG 104764 |||| || || ||||| || || | |||||||||||||| ||| | | ||||| Sbjct 118656 TTCTTGGCCCTTTGGATCCCCGACTTGTTCATGAAGAGAGTCAAGGCTAACGAGGATTGG 118715 Query 104765 TCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAA 104824 || | | || || | || |||||| | ||| | | || || || |||| Sbjct 118716 ACTTTGATGTGCCCTAATGAGTGTCCTGGTTTGGACGAGGTCTATGGAGACGAATTTGTT 118775 Query 104825 GCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGAT 104884 ||||| || |||||| || ||||||| | | || | | || | || Sbjct 118776 GCCCTCTATGAAAAGTATGAAAAAGAAGGCAAAGGTAGAAGAACTAT-CAAGGCTCAGAA 118834 Query 104885 G-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAA 104943 | | ||| | ||||| || || | ||||| |||||||||| || | |||||| ||||| Sbjct 118835 GCTCTGGTATGCTATCCTTGAGGCCCAAACTGAGACTGGTAACCCCTTCATGCTCTACAA 118894 Query 104944 AGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCT 105003 || || |||||| |||||||||||| | || ||||| ||||| |||||| | Sbjct 118895 GGATGCTTGTAACAGCAAGAGTAATCAACAAAACCTGGGTACTATCAAATCTTCCAACTT 118954 Query 105004 CTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATC 105063 || ||||| | || | | || || |||||| |||||| | || || Sbjct 118955 GTGCTGTGAAATTGTCGAGTACTCTTCTCCTGAAGAAGTGGCTGTTTGTAACTTGGCTTC 119014 Query 105064 AATCGCTCTCCCCAAGTATGTGGATCCAGA-GACAAAGACATTTG-----ATTATGAAAA 105117 | | || || | ||| || || || ||| | | || | | ||| || Sbjct 119015 TTTGTCCCTTCCTGCTTTTGTTGAAAGTGATGATGAAGGCTTATGGTACAACTTTGAGAA 119074 Query 105118 ACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTT 105177 |||||||||||| | || | || || | |||| | || ||||||| ||||| || Sbjct 119075 GCTCCACGAAGTTGCCAAGGCCGTTACTAGAAACTTGAATGTCATTATTGACAGAAACTT 119134 Query 105178 TTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGT 105237 || || || || ||| | | ||| | | ||| | || |||| ||| || | Sbjct 119135 CTATCCAGTAAAGGAGGCTGAGAGAAGTAACTTCCGTCACAGACCTATTGCTCTTGGCAT 119194 Query 105238 TCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATTCCGACGAAGC 105294 ||| ||| | || |||| ||||| ||| || | |||| || || ||||| Sbjct 119195 TCAAGGTTTAGCTGATGCTTTCATGGCTCTCCGTTTGC---CATTCGACTCTCCTGAAGC 119251 Query 105295 GAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTC 105354 ||| || | || | || | ||| ||||| || || || ||| | || | ||| Sbjct 119252 CAAGCAATTGAACATTCAAATCTCTGAAACCATTTACCATGCTGCTGTAGAATC---TTC 119308 Query 105355 A---GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACA 105411 | || | || ||| |||| | || || |||| |||||| ||||| ||||| | Sbjct 119309 AATTGAACTTGCTGAGAAATATGGCGCCTACGAGACCTATGAGGGATCTCCTGCTTCTAA 119368 Query 105412 AGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGAAGC 105471 || | | |||| || |||||||| | | ||| || | || |||| | Sbjct 119369 GGGTCTTTTACAATACGACATGTGGGATGTTACTCCCACTGATCTATGGGATTGGGCTAC 119428 Query 105472 TCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCC 105531 ||| ||| | || || | |||||| | ||| ||| ||| | ||||| ||||| Sbjct 119429 TCTTAAGAAGAAGATGGCTAAGCACGGTCTTAGAAACTCTCTTCTCGTTGCTCCTATGCC 119488 Query 105532 AACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAA 105591 || || || ||| | |||||| | ||||| |||||||| ||||| || ||||| | || Sbjct 119489 TACTGCTTCGACCTCCCAAATCCTCGGTAACAATGAATGTTTTGAGCCTTACACATCCAA 119548 Query 105592 CATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGG 105650 |||||| ||| | ||| ||| || |||||||| |||||||||| | | || Sbjct 119549 CATCTACTCT-CGTAGAGTCCTTGCTGGAGAGTTCCAGATTGTCAACCAATGGTTGTTGA 119607 Query 105651 ATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCTCATGGTGAAAG 105707 | || || || | || | ||| | | |||||| | |||| || || Sbjct 119608 AGGATCTTGTCGACTTGGGATTGTGGGGTGAAAACATGAAGAACAGAATCAT--TGCTAG 119665 Query 105708 CGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCA 105767 | |||||| |||||||| || | ||||| |||| || ||| || ||| | Sbjct 119666 C-AATGGTTCTATTCAAAACATCCCTAACATTCCTGATGACATCAAGGCTTTATACAAGA 119724 Query 105768 CAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCA 105827 | |||||||| || ||| ||||||| ||||| || || |||| | | | Sbjct 119725 CTGTTTGGGAGCTCTCTCAAAAGACAATCATTGATATGGCTGCTGACCGTGCTGCATATA 119784 Query 105828 TTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTT 105887 |||||||||||||| | |||| ||| || || ||| || ||| |||| | | Sbjct 119785 TTGATCAAAGTCAATCTTTGAACATCTATATCCAAGCTCCTACTATGGGCAAGTTGACCA 119844 Query 105888 CTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCG 105942 |||||| | || | ||| | ||||||||||| || || ||||| ||||| || Sbjct 119845 GTATGCATTTCTATGGATGGCAAAAGGGTCTCAAGACAGGTATGTACTACCTGCG 119899 >seq78 Length=1347436 Score = 111 bits (122), Expect = 2e-19 Identities = 340/510 (67%), Gaps = 23/510 (5%) Strand=Plus/Minus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGG-AAGAC--TCTAAAT 94497 ||||||||||||||| | ||||| ||||||| | || ||| || || ||| ||| Sbjct 285067 TGGACTGCTGAAGAGATTGATCTTGGAAAGGATATTAGTGACTGGGAACACCGTCTTAAT 285008 Query 94498 GAAAATGAAAAGAAATTCATAAAATACA---TCCTGGCATTCTTTGCTGGATCCGATGGA 94554 || |||| || |||| | | | | || || |||||||||| |||||||| Sbjct 285007 GATGATGA---GAGATTCTTTATCTCTCGTGTGCTCGCTTTCTTTGCTGCCTCCGATGGT 284951 Query 94555 ATTGTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAG 94613 ||||| |||||| | | | | || ||| |||||| || || | |||| || | Sbjct 284950 ATTGTCAATGAGAACCTTGTTGAGAGATTCTCTGGTGAGGTCCAGATTC-CTGAGGCCAA 284892 Query 94614 ATCCTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAAC 94672 | ||||| | | || |||| ||| | | | |||| ||||| ||| || Sbjct 284891 GTGTTTCTACGGATTCCAAA-TCATGATGGAGAATATCCATGCTGAGACTTACTCCTTAC 284833 Query 94673 TCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCA-A 94731 | || || | ||||| ||||||| | ||| || | || | || || | | Sbjct 284832 TTATTGATACTTATATCAAGGATGCTAAGGAGGCTAACTTCTTGTTCCATGCTATTGATA 284773 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAAG 94788 ||| |||| |||||| | ||||| || || ||||| | | ||| | |||| | Sbjct 284772 ACA-TTCCTTGTATTAAGAAGAAGGCTGACTGGGCCCTAACTTGGATCTCTGATGATCAA 284714 Query 94789 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848 || | ||||||||||||| ||| | || || || ||| |||||||||||||||||| Sbjct 284713 TC---TACCTTTGCTGAGCGTCTCGTTGCTTTCGCTGCTGTCGAGGGTATCTTCTTCTCT 284657 Query 94849 GGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 ||||| || ||| ||| | |||| | |||||||| ||||| ||||| ||| | || Sbjct 284656 GGTTCATT-TGCTAGTATCTTTTGGTTGAAGAAGCGTGGTCTTATGCCTGGTTTGACTTT 284598 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| || ||| | || |||||||| || || Sbjct 284597 CTCTAATGAGTTGATTTCTCGTGATGAAGG 284568 >seq155 Length=566151 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 105797 ATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTC 105856 || || |||||||| || || ||||| | |||||| || ||||||||||||| | ||| Sbjct 483628 ATCGATATGGCCGCCGACCGCGGTCGATACATTGACCAGTCTCAAAGTATGAATATTTTC 483687 Query 105857 ATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGT 105916 ||| ||| ||| || | ||| || || |||||| | ||| | ||||||||||| Sbjct 483688 ATGAAAAATCCCACTACTGGCAAACTTACTAGTATGCATTTCTACGGCTGGAAGAAGGGA 483747 Query 105917 CTCAAAACGGGGATGTATTA 105936 ||||| || || |||||||| Sbjct 483748 CTCAAGACAGGAATGTATTA 483767 >seq43 Length=391780 Score = 91.5 bits (100), Expect = 2e-13 Identities = 331/507 (65%), Gaps = 16/507 (3%) Strand=Plus/Plus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 ||| || || | ||| || || | | ||| | ||||||||||||| | ||| || | Sbjct 81706 ACGGTCGAATCTACCAGGTCGCAATAACGCCTTATCAAGGATATCAGGTCTATTAGTGCC 81765 Query 9583 GGCGATGACAACAATACCTGTT--TCATTATCAAAACCATCCATCTCTGTCAAAAGTTGG 9640 || | || || | | || | ||| ||||||||||||| || | || ||| Sbjct 81766 TGCTAGCACGACGACA--TGATCATCAGAGGCAAAACCATCCATTTCAACGAGAATTTGA 81823 Query 9641 TTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATA----CCACCAGCACTGCGTTGC 9694 |||| ||| ||| | |||||| | | | | || | ||||| ||| || || Sbjct 81824 TTAAGAGTAGCTTCTCTTTCATCGTGACCACCGCCAAAAGAACCACCTTGACTACGA-GC 81882 Query 9695 T-TTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 | |||| | ||||||||||||||||| || || || | || | | ||||| Sbjct 81883 TCTTCCAATAGCATCAATCTCATCAATAAATACAATACTAGGAGCCTCCTTACGAGCTGT 81942 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 |||| ||||| | || || | || || |||||||||||||||||||| || | | Sbjct 81943 AGCAAATAGATCTCTCACCCGGCTAGCACCAACACCAACAAACATCTCCACGAATTCCGA 82002 Query 9814 GGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 | | || ||| || || || ||| | ||||| || ||||| || || | || Sbjct 82003 GCCAGATACA-GAGAAAAATGGTACACCTGCCTCACCAGCTGTGGCTTTAGCAAGTAAAG 82061 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACTT 9931 ||||||| ||||| || ||| | || | |||||||| || |||||||| || | || Sbjct 82062 TCTTACCAGTACCAGGAGGACCAGAAAGAACAGCACCTCGAGGGATCTTGGCACCTAATT 82121 Query 9932 CCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCG 9991 | |||| | |||| | ||||| ||| |||| || | ||| ||||| || Sbjct 82122 TC-TCGTATTTAGCAGGCTCTTTAAGGAAACTAACAAACTCCATGATTTCCTCTTTAGCC 82180 Query 9992 GCGTCAATCCCCTCAACATCGGTAAAC 10018 ||||| || ||||||||| |||| Sbjct 82181 TCGTCAGCGCCAGCAACATCGGAAAAC 82207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259589733840