Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq87 87.8 1e-12 >seq87 Length=222757 Score = 87.8 bits (96), Expect = 1e-12 Identities = 265/404 (66%), Gaps = 19/404 (5%) Strand=Plus/Plus Query 111729 ATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTG 111788 ||| || || |||||||| || |||||| || || | | ||| | ||| | || Sbjct 40475 ATAGACGTGAGCATCTCCCATTGTATGGATGAAATCGCCACACTCTATTCCACATACTTG 40534 Query 111789 TGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCAT 111848 || ||||| | ||| || | ||| ||| || || || || ||||| | |||||| Sbjct 40535 AGCGATCATCTTTGTTAGCAACGCGTAGGAAGCGATATTGAAGGGGACACCCAAGCCCAT 40594 Query 111849 ATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTT-TG---TGAC--------AC 111896 || | |||||| || || || || || || | ||| || | || || Sbjct 40595 GTCACAACTTCTTTGGTACAGTTGGCAGGAGAGCTCTTTTCTGCCATTACGAAAGCTAAC 40654 Query 111897 ATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATAA----AGGGTC 111952 |||||| ||| | | ||||||||| || || | ||||| |||||||| ||||| Sbjct 40655 ATAAAACTGAGAGAATACATGACAGGGTGGTAGAGCCATATCATTCATATCGGCAGGGTT 40714 Query 111953 CCCATGCACACATGATCATCCTTCTGCTGTAGCGATTATGTTCAATGTCGTGTATGACAT 112012 || |||| ||||||| ||||||| || || | | || || | | || |||| Sbjct 40715 CC-ATGCCGACATGATAATCCTTCGATCATATGGAGTCTCTTTGATTTTTCGAATCACAT 40773 Query 112013 TCAAGAGCTGGTCTA-TCCCTTTACCAGTATAATCCGCCTGACATCCAGTGTATGTTGCC 112071 ||||| || | ||||||| ||||||||||| | | ||| | ||| | || Sbjct 40774 CTGCCAGCTGATCCACTCCCTTT-CCAGTATAATCTGTATCACAGTCTTCATATTTGGCA 40832 Query 112072 CCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCC 112115 ||| | || | |||||| |||||||| | ||| || |||||||| Sbjct 40833 CCAAAATGACGCCATTGAAATCCATAGACAGGTCCTAGATCTCC 40876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391944807045058