Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq79 132 5e-26 seq155 109 6e-19 seq78 87.8 2e-12 >seq79 Length=299291 Score = 132 bits (146), Expect = 5e-26 Identities = 545/858 (64%), Gaps = 16/858 (2%) Strand=Plus/Minus Query 79039 AAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACC 79098 |||| || ||| ||| || |||| ||| || || ||| || || || ||| | Sbjct 119032 AAAGCAGGAAGGGACAAAGAAGCCAAGTTACAAACAGCCACTTCTTCAGGAGAAGAGTAC 118973 Query 79099 TCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTC 79158 |||| ||||| |||||| || || || ||||| || || | ||| | || || ||| Sbjct 118972 TCGACAATTTCACAGCACAAGTTGGAAGATTTGATAGTACCCAGGTTTTGTTGATTACTC 118913 Query 79159 TTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTG 79218 || |||||| || ||||||||| |||| | || | || |||||| || || Sbjct 118912 TTGCTGTTACAAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTTTGGGCCTCA 118853 Query 79219 AGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGA--CCCTGTGCGA 79276 || | | | ||||| | | | ||| || | ||||| |||| || | | Sbjct 118852 AGGATAGCATACCAGAGCTTCTGAGCCTTGATAG--TTCTTCTACCTTTGCCTTCTTTTT 118795 Query 79277 CGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACT 79336 | ||| | || | | || | || |||||||| ||| || || || |||| Sbjct 118794 CATACTTTTCATAGAGGGCAACAAATTCGTCTCCATAGACCTCGTCCAAACCAGGACACT 118735 Query 79337 CGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCG 79396 | | |||||||||| ||| ||||||| || || ||| |||||| | ||| | Sbjct 118734 CATTAGGGCACATCAAAGTCCAATCCTCGTTAGCCTTGACTCTCTTCATGAACAAGTCGG 118675 Query 79397 GGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGAC 79456 ||||||| |||||| ||| | || | | ||| | || || | || |||||| | Sbjct 118674 GGATCCAAAGGGCCAAGAACAAATCTCTGGCACGGACTTCTTCCTTACCGTGGTTCTTTC 118615 Query 79457 GCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAAC 79516 ||| |||| || || | | ||| ||||||| ||||||| || |||||||| | || Sbjct 118614 GCAAGTCGATGAATTCAAAAACATCGTCGTGCCAAGGCTCCAAGTACATGGCGAAAGCAC 118555 Query 79517 CCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCA 79576 | | |||| || || |||| || || | || |||||||||||||||| | || Sbjct 118554 CTGGTCTCTTGTTACCACCTTGGTCAACATATCTAGCAGTGTTGTTGAAAACTCTCAACA 118495 Query 79577 TGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAA 79636 | || || || |||| | ||||| || ||| || | ||| | || || | Sbjct 118494 TAGGGACAATACCGTTAGAAGTACCGTTAGTACCGGCAATATAGGAACCAGTGGCACGGA 118435 Query 79637 TGTTCGAGCAGTGGAT------TCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACT 79690 | || |||||| || || || || | |||| ||||| || || Sbjct 118434 TATT------GTGGATACTCAAACCAATACCACCTGCAGACTTCGAGATCAAGGCACAGG 118381 Query 79691 CCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGC 79750 ||| | || || ||||| ||||| || ||||| |||||||| |||| ||| || Sbjct 118380 TCTTCAAAGTATCATAGATACCCTCAATGGAGTCATCCTTCATGTTTACCAAGAAACAAG 118321 Query 79751 TCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGA 79810 |||||| ||||| ||| ||||| || ||| | | || || | || || || ||| Sbjct 118320 ACGACATTTGTGGCTTGGGAGTACCAGCATTGTACAAAGTAGGAGAAGCATGAGTAAAGT 118261 Query 79811 ACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGC 79870 ||||||| ||| || ||| || || || | | | ||| |||| ||||| | Sbjct 118260 ACTTTTGTGACATGTAATTGTAAGTTTCAATGGCCTTGGCAATGTCCGCGCCATGGATAC 118201 Query 79871 CGACCGCGACGCGCATGA 79888 | || || || | ||||| Sbjct 118200 CAACAGCTACTCTCATGA 118183 Score = 118 bits (130), Expect = 1e-21 Identities = 386/593 (65%), Gaps = 20/593 (3%) Strand=Plus/Plus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGC-GAGACATAC 19174 ||||| |||| || || || |||||||||| ||| | | | || || || || ||| Sbjct 118183 TCATGAGAGTAGCTGTTGGTATCCATGGCGCGGACATTGC-CAAGGCCATTGAAACTTAC 118241 Query 19175 GACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACG 19234 | ||| || |||| ||| || || || | || || | | ||| || ||||| Sbjct 118242 AATTACATGTCACAAAAGTACTTTACTCATGCTTCTCCTACTTTGTACAATGCTGGTACT 118301 Query 19235 AACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294 ||| || || |||||| |||||| | || |||||||||||| ||||||||| Sbjct 118302 CCCAAGCCACAAATGTCGTCTTGTTTCTTGGTAAACATGAAGGATGACTCCATTGAGGGT 118361 Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG--- 19351 ||||| || || | ||| || || ||||| |||| | || ||||| || Sbjct 118362 ATCTATGATACTTTGAAGACCTGTGCCTTGATCTCGAAGTCTGCAGGTGGTATTGGTTTG 118421 Query 19352 ---ATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTA 19408 |||||| |||||||| | | |||| | || || || ||||| Sbjct 118422 AGTATCCAC------AATATCCGTGCCACTGGTTCCTATATTGCCGGTACTAACGGTACT 118475 Query 19409 GCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAG 19468 | ||||||| ||||| ||| | | || ||||||||||| || || || || |||| Sbjct 118476 TCTAACGGTATTGTCCCTATGTTGAGAGTTTTCAACAACACTGCTAGATATGTTGACCAA 118535 Query 19469 GGGGGCGGCAAACG--CAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACG 19526 || || ||| | || | ||| |||||||| ||| | ||||| ||||||| || | Sbjct 118536 GGTGGTAACAAGAGACCAGGTGCT--TTCGCCATGTACTTGGAGCCTTGGCACGACGATG 118593 Query 19527 TCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC-GCGAC 19585 | | || ||| |||| |||| |||||| ||| | || || | || || | | || Sbjct 118594 TTTTTGAATTCATCGACTTGCGAAAGAACCACGGTAAGGAAGAAGTCCG-TGCCAGAGAT 118652 Query 19586 CTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAA 19645 | ||| |||| | ||||| || ||| | |||||| ||| || || |||| || Sbjct 118653 TTGTTCTTGGCCCTTTGGATCCCCGACTTGTTCATGAAGAGAGTCAAGGCTAACGAGGAT 118712 Query 19646 TGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698 ||| |||||||||| | || || ||||| | ||| ||||| || || Sbjct 118713 TGGACTTTGATGTGCCCTAATGAGTGTCCTGGTTTGGACGAGGTCTATGGAGA 118765 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || |||| |||||||| || |||||||||||||| | |||||| || | |||||||| Sbjct 119902 GTACGCAGGTAGTACATACCTGTCTTGAGACCCTTTTGCCATCCATAGAAATGCATACTG 119843 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | || |||| ||| | | || | || ||||||| | || || || || || Sbjct 119842 GTCAACTTGCCCATAGTAGGAGCTTGGATATAGATGTTCAAAGATTGACTTTGATCAATA 119783 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 || ||| | ||||| || ||||| || |||| | |||||| | | |||||| | ||| Sbjct 119782 TATGCAGCACGGTCAGCAGCCATATCAATGATTGTCTTTTGAGAGAGCTCCCAAACAGTC 119723 Query 78370 CGGTAAATGGCCTT 78383 ||| | ||||| Sbjct 119722 TTGTATAAAGCCTT 119709 >seq155 Length=566151 Score = 109 bits (120), Expect = 6e-19 Identities = 123/161 (76%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 78189 TGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACT 78248 |||||| ||||| ||||| || |||||||| ||||||||||| ||||| | |||||||| Sbjct 483777 TGTTCGTAAATAATACATTCCTGTCTTGAGTCCCTTCTTCCAGCCGTAGAAATGCATACT 483718 Query 78249 CGACAGCTTGGCCAG-ACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307 | || ||| |||| | | || || | |||||| || || | || |||||||| | Sbjct 483717 AGTAAGTTTG-CCAGTAGTGGGATTTTTCATGAAAATATTCATACTTTGAGACTGGTCAA 483659 Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTT 78348 |||| |||||||||||| ||||| ||||| | | ||||| Sbjct 483658 TGTATCGACCGCGGTCGGCGGCCATATCGATTATC-ACTTT 483619 >seq78 Length=1347436 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 ||||| | |||||| | ||||| || ||| || || || |||||||||||||| || || Sbjct 284707 TTTGCTGAGCGTCTCGTTGCTTTCGC-TGCTGTCGAGGGTATCTTCTTCTCTGGTTCATT 284649 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 | ||| || ||| | || |||||||| || ||||| || ||| |||||| || || Sbjct 284648 TGCTAGTATCTTTTGGTTGAAGAAGCGTGGTCTTATGCCTGGTTTGACTTTCTCTAATGA 284589 Query 60092 GCTGATTTCCCGGGACGAGGGC 60113 | ||||||| || || || ||| Sbjct 284588 GTTGATTTCTCGTGATGAAGGC 284567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523661811040