Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq79 132 5e-26
seq155 109 6e-19
seq78 87.8 2e-12
>seq79
Length=299291
Score = 132 bits (146), Expect = 5e-26
Identities = 545/858 (64%), Gaps = 16/858 (2%)
Strand=Plus/Minus
Query 79039 AAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACC 79098
|||| || ||| ||| || |||| ||| || || ||| || || || ||| |
Sbjct 119032 AAAGCAGGAAGGGACAAAGAAGCCAAGTTACAAACAGCCACTTCTTCAGGAGAAGAGTAC 118973
Query 79099 TCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTC 79158
|||| ||||| |||||| || || || ||||| || || | ||| | || || |||
Sbjct 118972 TCGACAATTTCACAGCACAAGTTGGAAGATTTGATAGTACCCAGGTTTTGTTGATTACTC 118913
Query 79159 TTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTG 79218
|| |||||| || ||||||||| |||| | || | || |||||| || ||
Sbjct 118912 TTGCTGTTACAAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTTTGGGCCTCA 118853
Query 79219 AGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGA--CCCTGTGCGA 79276
|| | | | ||||| | | | ||| || | ||||| |||| || | |
Sbjct 118852 AGGATAGCATACCAGAGCTTCTGAGCCTTGATAG--TTCTTCTACCTTTGCCTTCTTTTT 118795
Query 79277 CGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACT 79336
| ||| | || | | || | || |||||||| ||| || || || ||||
Sbjct 118794 CATACTTTTCATAGAGGGCAACAAATTCGTCTCCATAGACCTCGTCCAAACCAGGACACT 118735
Query 79337 CGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCG 79396
| | |||||||||| ||| ||||||| || || ||| |||||| | ||| |
Sbjct 118734 CATTAGGGCACATCAAAGTCCAATCCTCGTTAGCCTTGACTCTCTTCATGAACAAGTCGG 118675
Query 79397 GGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGAC 79456
||||||| |||||| ||| | || | | ||| | || || | || |||||| |
Sbjct 118674 GGATCCAAAGGGCCAAGAACAAATCTCTGGCACGGACTTCTTCCTTACCGTGGTTCTTTC 118615
Query 79457 GCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAAC 79516
||| |||| || || | | ||| ||||||| ||||||| || |||||||| | ||
Sbjct 118614 GCAAGTCGATGAATTCAAAAACATCGTCGTGCCAAGGCTCCAAGTACATGGCGAAAGCAC 118555
Query 79517 CCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCA 79576
| | |||| || || |||| || || | || |||||||||||||||| | ||
Sbjct 118554 CTGGTCTCTTGTTACCACCTTGGTCAACATATCTAGCAGTGTTGTTGAAAACTCTCAACA 118495
Query 79577 TGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAA 79636
| || || || |||| | ||||| || ||| || | ||| | || || |
Sbjct 118494 TAGGGACAATACCGTTAGAAGTACCGTTAGTACCGGCAATATAGGAACCAGTGGCACGGA 118435
Query 79637 TGTTCGAGCAGTGGAT------TCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACT 79690
| || |||||| || || || || | |||| ||||| || ||
Sbjct 118434 TATT------GTGGATACTCAAACCAATACCACCTGCAGACTTCGAGATCAAGGCACAGG 118381
Query 79691 CCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGC 79750
||| | || || ||||| ||||| || ||||| |||||||| |||| ||| ||
Sbjct 118380 TCTTCAAAGTATCATAGATACCCTCAATGGAGTCATCCTTCATGTTTACCAAGAAACAAG 118321
Query 79751 TCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGA 79810
|||||| ||||| ||| ||||| || ||| | | || || | || || || |||
Sbjct 118320 ACGACATTTGTGGCTTGGGAGTACCAGCATTGTACAAAGTAGGAGAAGCATGAGTAAAGT 118261
Query 79811 ACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGC 79870
||||||| ||| || ||| || || || | | | ||| |||| ||||| |
Sbjct 118260 ACTTTTGTGACATGTAATTGTAAGTTTCAATGGCCTTGGCAATGTCCGCGCCATGGATAC 118201
Query 79871 CGACCGCGACGCGCATGA 79888
| || || || | |||||
Sbjct 118200 CAACAGCTACTCTCATGA 118183
Score = 118 bits (130), Expect = 1e-21
Identities = 386/593 (65%), Gaps = 20/593 (3%)
Strand=Plus/Plus
Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGC-GAGACATAC 19174
||||| |||| || || || |||||||||| ||| | | | || || || || |||
Sbjct 118183 TCATGAGAGTAGCTGTTGGTATCCATGGCGCGGACATTGC-CAAGGCCATTGAAACTTAC 118241
Query 19175 GACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACG 19234
| ||| || |||| ||| || || || | || || | | ||| || |||||
Sbjct 118242 AATTACATGTCACAAAAGTACTTTACTCATGCTTCTCCTACTTTGTACAATGCTGGTACT 118301
Query 19235 AACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294
||| || || |||||| |||||| | || |||||||||||| |||||||||
Sbjct 118302 CCCAAGCCACAAATGTCGTCTTGTTTCTTGGTAAACATGAAGGATGACTCCATTGAGGGT 118361
Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG--- 19351
||||| || || | ||| || || ||||| |||| | || ||||| ||
Sbjct 118362 ATCTATGATACTTTGAAGACCTGTGCCTTGATCTCGAAGTCTGCAGGTGGTATTGGTTTG 118421
Query 19352 ---ATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTA 19408
|||||| |||||||| | | |||| | || || || |||||
Sbjct 118422 AGTATCCAC------AATATCCGTGCCACTGGTTCCTATATTGCCGGTACTAACGGTACT 118475
Query 19409 GCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAG 19468
| ||||||| ||||| ||| | | || ||||||||||| || || || || ||||
Sbjct 118476 TCTAACGGTATTGTCCCTATGTTGAGAGTTTTCAACAACACTGCTAGATATGTTGACCAA 118535
Query 19469 GGGGGCGGCAAACG--CAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACG 19526
|| || ||| | || | ||| |||||||| ||| | ||||| ||||||| || |
Sbjct 118536 GGTGGTAACAAGAGACCAGGTGCT--TTCGCCATGTACTTGGAGCCTTGGCACGACGATG 118593
Query 19527 TCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC-GCGAC 19585
| | || ||| |||| |||| |||||| ||| | || || | || || | | ||
Sbjct 118594 TTTTTGAATTCATCGACTTGCGAAAGAACCACGGTAAGGAAGAAGTCCG-TGCCAGAGAT 118652
Query 19586 CTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAA 19645
| ||| |||| | ||||| || ||| | |||||| ||| || || |||| ||
Sbjct 118653 TTGTTCTTGGCCCTTTGGATCCCCGACTTGTTCATGAAGAGAGTCAAGGCTAACGAGGAT 118712
Query 19646 TGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698
||| |||||||||| | || || ||||| | ||| ||||| || ||
Sbjct 118713 TGGACTTTGATGTGCCCTAATGAGTGTCCTGGTTTGGACGAGGTCTATGGAGA 118765
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249
|| |||| |||||||| || |||||||||||||| | |||||| || | ||||||||
Sbjct 119902 GTACGCAGGTAGTACATACCTGTCTTGAGACCCTTTTGCCATCCATAGAAATGCATACTG 119843
Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309
| || |||| ||| | | || | || ||||||| | || || || || ||
Sbjct 119842 GTCAACTTGCCCATAGTAGGAGCTTGGATATAGATGTTCAAAGATTGACTTTGATCAATA 119783
Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369
|| ||| | ||||| || ||||| || |||| | |||||| | | |||||| | |||
Sbjct 119782 TATGCAGCACGGTCAGCAGCCATATCAATGATTGTCTTTTGAGAGAGCTCCCAAACAGTC 119723
Query 78370 CGGTAAATGGCCTT 78383
||| | |||||
Sbjct 119722 TTGTATAAAGCCTT 119709
>seq155
Length=566151
Score = 109 bits (120), Expect = 6e-19
Identities = 123/161 (76%), Gaps = 3/161 (2%)
Strand=Plus/Minus
Query 78189 TGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACT 78248
|||||| ||||| ||||| || |||||||| ||||||||||| ||||| | ||||||||
Sbjct 483777 TGTTCGTAAATAATACATTCCTGTCTTGAGTCCCTTCTTCCAGCCGTAGAAATGCATACT 483718
Query 78249 CGACAGCTTGGCCAG-ACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307
| || ||| |||| | | || || | |||||| || || | || |||||||| |
Sbjct 483717 AGTAAGTTTG-CCAGTAGTGGGATTTTTCATGAAAATATTCATACTTTGAGACTGGTCAA 483659
Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTT 78348
|||| |||||||||||| ||||| ||||| | | |||||
Sbjct 483658 TGTATCGACCGCGGTCGGCGGCCATATCGATTATC-ACTTT 483619
>seq78
Length=1347436
Score = 87.8 bits (96), Expect = 2e-12
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031
||||| | |||||| | ||||| || ||| || || || |||||||||||||| || ||
Sbjct 284707 TTTGCTGAGCGTCTCGTTGCTTTCGC-TGCTGTCGAGGGTATCTTCTTCTCTGGTTCATT 284649
Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091
| ||| || ||| | || |||||||| || ||||| || ||| |||||| || ||
Sbjct 284648 TGCTAGTATCTTTTGGTTGAAGAAGCGTGGTCTTATGCCTGGTTTGACTTTCTCTAATGA 284589
Query 60092 GCTGATTTCCCGGGACGAGGGC 60113
| ||||||| || || || |||
Sbjct 284588 GTTGATTTCTCGTGATGAAGGC 284567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548523661811040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |