Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq79 131 2e-25 seq78 96.9 4e-15 seq155 86.0 7e-12 >seq79 Length=299291 Score = 131 bits (144), Expect = 2e-25 Identities = 348/527 (66%), Gaps = 16/527 (3%) Strand=Plus/Plus Query 53264 CAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAG 53323 |||||||||||||| || || | || || ||| ||| |||||||| | || || Sbjct 118254 CAAAAGTACTTTACTCATGCTTCTCCTACTTTGTACAATGCTGGTACTCCCAAGCCACAA 118313 Query 53324 ATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACG 53383 |||||| || ||| |||| |||||||||||||| || || || ||||| || || Sbjct 118314 ATGTCGTCTTGTTTCTTGGTAAACATGAAGGATGACTCCATTGAGGGTATCTATGATACT 118373 Query 53384 CTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGT------ATCCACTGC 53437 | ||| |||||| ||||| |||| | |||||||| ||| |||||| Sbjct 118374 TTGAAGACCTGTGCCTTGATCTCGAAGTCTGCAGGTGGTATTGGTTTGAGTATCCAC--- 118430 Query 53438 TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATC 53497 || ||||||| | || | || || || ||||| | | || || Sbjct 118431 ---AATATCCGTGCCACTGGTTCCTATATTGCCGGTACTAACGGTACTTCTAACGGTATT 118487 Query 53498 GTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAG 53557 || |||||| | | || ||||||||||| || | || || |||| |||||| ||| Sbjct 118488 GTCCCTATGTTGAGAGTTTTCAACAACACTGCTAGATATGTTGACCAAGGTGGTAACAAG 118547 Query 53558 CG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCT 53616 | | ||| | | |||||||| ||| | ||||| ||||||| ||| || | || || | Sbjct 118548 AGACCAGGTG-CTTTCGCCATGTACTTGGAGCCTTGGCACGACGATGTTTTTGAATTCAT 118606 Query 53617 CGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC-GTGACCTGTTTACAGCTC 53675 ||| |||| ||| || ||| | ||||| | || |||| | || |||| || | Sbjct 118607 CGACTTGCGAAAGAACCACGGTAAGGAAGAAGTCCG-TGCCAGAGATTTGTTCTTGGCCC 118665 Query 53676 TGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGT 53735 | ||||| || ||| | |||||| | | || || ||||||| ||| |||||| Sbjct 118666 TTTGGATCCCCGACTTGTTCATGAAGAGAGTCAAGGCTAACGAGGATTGGACTTTGATGT 118725 Query 53736 GCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 |||| || ||||| || || | | | ||||| || || || ||| Sbjct 118726 GCCCTAATGAGTGTCCTGGTTTGGACGAGGTCTATGGAGACGAATTT 118772 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| | ||| ||| || |||||| | | || |||| | ||||| ||| || Sbjct 119707 TCAAGGCTTTATACAAGACTGTTTGGGAGCTCTCTCAAAAGACAATCATTGATATGGCTG 119766 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 |||| |||| ||| || || || || || ||| ||||||||| || | |||| Sbjct 119767 CTGACCGTGCTGCATATATTGATCAAAGTCAATCTTTGAACATCTATATCCAAGCTCCTA 119826 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | ||| |||||||| | ||||| || || || ||| | ||||| |||||||| |||| Sbjct 119827 CTATGGGCAAGTTGACCAGTATGCATTTCTATGGATGGCAAAAGGGTCTCAAGACAGGTA 119886 Query 55908 TGTACTATCTGCGGAC 55923 ||||||| ||||| || Sbjct 119887 TGTACTACCTGCGTAC 119902 >seq78 Length=1347436 Score = 96.9 bits (106), Expect = 4e-15 Identities = 332/510 (65%), Gaps = 16/510 (3%) Strand=Plus/Plus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||||||||| | ||||| ||||| || || | | ||||||||||| |||||||| Sbjct 284567 GCCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAAACCAGGCATAAGACCACGCTT 284626 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||||||||||||||| | || |||||| ||||||||| || |||||| || || Sbjct 284627 CTTCAACCAAAAGATACTAGCAAATGAACCAGAGAAGAAGATACCCTCGACAGCAGCGAA 284686 Query 74888 GGCGACAAGGCGTTGCGCGAA---CGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTC 74944 || || || || | || || | | ||| || |||||||| | ||||| || Sbjct 284687 AGCAACGAGACGCTCAGCAAAGGTAGATTGATCATCAGAGATCCAAGTTAGGGCCCAGTC 284746 Query 74945 AGCTTTTCGTTTGACCGCAGGGACAG-TATCGATCGCTTGG---AAGAGGCTTGCCTTCT 75000 ||| ||| | | | || ||| | |||| || || ||| |||| | | || || Sbjct 284747 AGC-CTTCTTCTTAATACAAGGAATGTTATCAATAGCATGGAACAAGAAGTTAGC---CT 284802 Query 75001 CTTCGGGATCCTTGACGAGCTTGTCAATCA-TAAGTGAGTACGTCTCCGAATGAATCGAC 75059 | | | |||||||| | ||||| | |||| ||||| ||||| | ||| || | Sbjct 284803 CCTTAGCATCCTTGATATAAGTATCAATAAGTAAG-GAGTAAGTCTCAGCATGGATATTC 284861 Query 75060 TCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAA 75119 || | | ||| | |||||||| || ||||| | |||||| || || || Sbjct 284862 TCCATCATGATTTGGAATCCGTAGAAACACTTGGCCTCAGGAATCTGGACCTCACCAGAG 284921 Query 75120 AAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACC 75179 || || | | ||||| |||| || || || ||||| || || ||||| || || Sbjct 284922 AATCTCTCAACAAGGTTCTCATTGACAATACCATCGGAGGCAGCAAAGAAAGCGAGCACA 284981 Query 75180 ATTTTGATAAAGTGGCGCTCATCGTCAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCC 75236 ||||||| | |||||| ||| | | | | ||||| || | | ||| Sbjct 284982 CGAGAGATAAAGAATCTCTCATCATCATTAAGACGGTGTTCCCAGTCACTAATATCCTTT 285041 Query 75237 GCCAAATCAATCTCCTCGACCGTCCAGAAA 75266 | | ||||||||| || | ||||||||| Sbjct 285042 CCAAGATCAATCTCTTCAGCAGTCCAGAAA 285071 >seq155 Length=566151 Score = 86.0 bits (94), Expect = 7e-12 Identities = 141/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 55730 AAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC-TGATTGACATGAGTGC 55788 |||||||| || ||||| ||||| | ||||| ||| | || || ||| || Sbjct 483583 AAGGAGATATATAAGACGGCCTGGGAATTGAGCCAGAA-AGTGATAATCGATATGGCCGC 483641 Query 55789 TGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTC 55848 || || ||| ||||| |||||||| || | |||| || |||||| | ||||| | Sbjct 483642 CGACCGCGGTCGATACATTGACCAGTCTCAAAGTATGAATATTTTCATGAAAAATCCCAC 483701 Query 55849 -ACTGGCCAAGTTGAGCTCG-ATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 |||||| || || || | ||||| || ||||| |||||||||||||||||||| || Sbjct 483702 TACTGGCAAACTTA--CTAGTATGCATTTCTACGGCTGGAAGAAGGGACTCAAGACAGGA 483759 Query 55907 ATGTACTATCTGCGGAC 55923 ||||| ||| | || || Sbjct 483760 ATGTATTATTTACGAAC 483776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214864526800