Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq32 194 2e-44
seq90 179 4e-40
seq111 159 4e-34
seq79 159 4e-34
>seq32
Length=396137
Score = 194 bits (214), Expect = 2e-44
Identities = 179/227 (79%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| | || |||||||||||||| |||||||| || || |
Sbjct 381661 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTCGAATCTTCT 381602
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| ||| | ||| | || || || ||||||||||| ||||| ||||||||
Sbjct 381601 GATACTATTGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAA 381542
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | || || |||||||| |||||||||||||||| ||||| || | ||||| ||
Sbjct 381541 CAAAGACTCATCTTTGCTGGCAAGCAACTCGAGGATGGCCGTACTCTCTCTGACTACAAC 381482
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| || |||||||| || ||| | ||||| || |||||
Sbjct 381481 ATCCAAAAGGAGTCTACTCTTCACCTCGTCCTTCGTCTCCGTGGTGG 381435
Score = 190 bits (210), Expect = 2e-43
Identities = 180/230 (78%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|||||||||||||| || ||||| ||||| || ||||| || ||||||||||| |||||
Sbjct 381892 ATAATGCAAATCTTCGTAAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTCGAGTCT 381833
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
||| | ||| | || | ||| | || ||||| |||||||| || ||||||||||||
Sbjct 381832 TCTGACACCATCGACAACGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGAC 381773
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
|| |||||| | ||||| |||||||||||||| || || | |||||| || | || ||
Sbjct 381772 CAACAGCGTTTGATTTTCGCTGGTAAGCAACTGGAAGACGGTCGTACTCTTTCTGATTAC 381713
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||||||| ||||||||||| || | ||| | ||||| || |||||
Sbjct 381712 AACATCCAAAAAGAATCCACTCTCCACTTGGTCCTCCGTCTCCGTGGTGG 381663
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || || || ||||| || || |||||||| |||||
Sbjct 380977 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAGTCTTCC 380918
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || || || ||||||||||| ||||| ||||||||
Sbjct 380917 GACACCATCGACAACGTTAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 380858
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | ||||| |||||||||||||| ||||||| | ||||| | ||||| ||
Sbjct 380857 CAGCGTTTGATTTTCGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTTCCGACTACAAC 380798
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| |||||||| || ||||| | ||||| || |||||
Sbjct 380797 ATCCAAAAGGAGTCCACTCTCCACTTAGTCCTTCGTCTGCGTGGTGG 380751
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| | || || ||||| || ||||| || ||||| ||
Sbjct 381205 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAAGTTGAATCTTCC 381146
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||| | || || || ||||||||||| ||||| ||||||||
Sbjct 381145 GACACCATCGATAATGTTAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAA 381086
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | ||||| |||||||||||||||||||||| ||||| || | || || ||
Sbjct 381085 CAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTTTCTGATTACAAC 381026
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||||| ||||||||||| || | ||| | ||||| || |||||
Sbjct 381025 ATCCAAAAAGAATCCACTCTCCACTTGGTCCTCCGTCTCCGTGGTGG 380979
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || || || |||||||| ||||| || || ||||| |
Sbjct 381433 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAGACTATCACTCTCGAAGTAGAGTCTTCT 381374
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||| | || |||||||| |||||||| ||||| ||||||||
Sbjct 381373 GACACCATCGATAATGTTAAGACCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAA 381314
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | || || ||||||||||||||||||||||||| | || || | ||||| ||
Sbjct 381313 CAAAGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGCAGAACTCTTTCTGACTACAAC 381254
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| || ||||| || || ||| | ||||| || |||||
Sbjct 381253 ATTCAAAAGGAGTCTACTCTCCACCTCGTCCTTCGTCTCCGTGGTGG 381207
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||||||||| || ||||||||||| || || || ||||| ||||| |
Sbjct 380749 ATGCAAATCTTTGTCAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCT 380690
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || || || ||||||||||| ||||| ||||||||
Sbjct 380689 GACACCATCGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 380630
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || || ||||||||||| | || || | | ||||| | ||||| ||
Sbjct 380629 CAACGTCTTATCTTCGCTGGTAAGCAGTTGGAAGACGGCAGAACCCTCTCTGACTACAAC 380570
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || | ||| | ||||| || || ||
Sbjct 380569 ATCCAGAAGGAGTCCACCCTCCACTTGGTCCTCCGTCTCCGTGGCGG 380523
>seq90
Length=207308
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || |||||||| |||||||| ||||| || || || |||||||||||
Sbjct 159289 ATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTCC 159230
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||| | || || || ||||||||||||||||| ||||| ||
Sbjct 159229 GACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAA 159170
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || ||||||||||||||||| ||||| | |||||| || | || || ||
Sbjct 159169 CAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACTCTTTCTGATTACAAC 159110
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| || ||||| || || ||| | ||||| || |||||
Sbjct 159109 ATCCAAAAGGAGTCTACTCTCCACCTTGTCCTCCGTCTCCGTGGTGG 159063
>seq111
Length=751517
Score = 159 bits (176), Expect = 4e-34
Identities = 166/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| |||||||| ||||| || ||||| || || || ||||| ||||| || | ||||
Sbjct 299039 TTCGTCAAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCATT 299098
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || ||||||||||| |||||||| ||||| || || |||||
Sbjct 299099 GACAATGTCAAGACCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAACAACGTCTT 299158
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| || ||||||||||||||||| |||| | ||||| | ||||| || ||||||||
Sbjct 299159 ATCTTCGCTGGTAAGCAACTCGAAGATGGCAGAACCCTTTCTGACTACAACATCCAAAAG 299218
Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || |||||||| || ||| | ||| | | |||||
Sbjct 299219 GAGTCTACTCTTCACCTTGTCCTCCGTTTGAGAGGTGG 299256
>seq79
Length=299291
Score = 159 bits (176), Expect = 4e-34
Identities = 673/1051 (64%), Gaps = 35/1051 (3%)
Strand=Plus/Minus
Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774
|||||| | ||||| | || |||| ||| | || || || | ||| || |||
Sbjct 119219 CATGAAAGCATCAGCTAAACCTTGAATGCCAAGAGCAATAGGTCTGTGACGGAAGTTACT 119160
Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834
|| ||| |||||| | ||| || ||||| | || || | | |||| ||| | ||
Sbjct 119159 TCTCTCAGCCTCCTTTACTGGATAGAAGTTTCTGTCAATAATGACATTCAAGTTTCTAGT 119100
Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA---------TTGGT--TCCCC 80883
||| || | ||| || || || |||| ||||| | | || | || |
Sbjct 119099 AACGGCCTTGGCAACTTCGTGGAGCTTCTCAAAGTTGTACCATAAGCCTTCATCATCACT 119040
Query 80884 TTCA-CAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATC 80942
|||| |||| || |||||| || || |||| || || || ||||| ||||||| |
Sbjct 119039 TTCAACAAAAGCAGGAAGGGACAAAGAAGCCAAGTTACAAACAGCCACTTCTTCAGGAGA 118980
Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002
| ||||||| ||||| |||||| || ||||| || || ||||||||||||| ||
Sbjct 118979 AGAGTACTCGACAATTTCACAGCACAAGTTGGAAGATTTGATAGTACCCAGGTTTTGTTG 118920
Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062
|| |||| ||| ||||| ||||||||| |||| | ||| |||| ||||| ||
Sbjct 118919 ATTACTCTTGCTGTTACAAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTTTG 118860
Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTC 81122
| || ||||| || | ||| | || | ||||||| | | |||||||||
Sbjct 118859 GGCCTCAAGGATAGCATACCAGAGCTTCTGAGCCTTGATAGTTCTTCTACCTTTGCCTTC 118800
Query 81123 GGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGG 81182
||||||| | || | | || | | | || | | || | | ||
Sbjct 118799 TTTTTCATACTTTTCATAGAGGGCAACAAATTCGTCTCCATAGACCTCGTCCAAACCAGG 118740
Query 81183 GCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTT---CTCTACAGCCTTCATGAA 81239
||||| ||||||||||||| ||| || ||||| || || |||||||||
Sbjct 118739 ACACTCATTAGGGCACATCAAAGTCCAATC---CTCGTTAGCCTTGACTCTCTTCATGAA 118683
Query 81240 AGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGC-GGCAGCGCGCCTCCTCATCACCCT 81298
||| |||||||| ||||| ||||| || | |||| || | || || | ||| |
Sbjct 118682 CAAGTCGGGGATCCAAAGGGCCAAGAACAAATCTCTGGCA-CGGACTTCTTCCTTACCGT 118624
Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358
|||| ||||| |||| || || | | || | ||||| ||||||| |||| ||
Sbjct 118623 GGTTCTTTCGCAAGTCGATGAATTCAAAAACATCGTCGTGCCAAGGCTCCAAGTACATGG 118564
Query 81359 CGATCG-AC-----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAA 81412
||| | || | |||| | ||||| |||| || || | ||||| ||| |
Sbjct 118563 CGAAAGCACCTGGTCTCTTGTTA---CCACCTTGGTCAACATATCTAGCAGTGTTGTTGA 118507
Query 81413 ATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACC 81472
| || | ||||||||||| ||||| | || |||||| ||||| | ||| || |
Sbjct 118506 AAACTCTCAACATAGGGACAATACCGTTAGAAGTACCGTTAGTACCGGCAATATAGGAAC 118447
Query 81473 CCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAG 81532
| |||| || | ||| ||| | ||| || ||||||| |||| || ||| |
Sbjct 118446 CAGTGGCACGGATATTGTGGATACTCAAACCAATACCACCTGCAGACTTCGAGATCAAGG 118387
Query 81533 CACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGA 81592
|||| |||| || ||||| || ||||| ||| || | ||||||| | |||||
Sbjct 118386 CACAGGTCTTCAAAGTATCATAGATACCCTCAATGGAGTCATCCTTCATGTTTACCAAGA 118327
Query 81593 AACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTG 81650
|||| ||||| || || || ||| || |||||| ||| || || | || ||
Sbjct 118326 AACAAGACGACATTTGTGG--CTTGGGAGTACCAGCATTGTACAAAGTAGGAGAAGCATG 118269
Query 81651 AATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGG-AATATCGTCAC 81709
| | || || | |||||| | || ||||| || | | ||| ||| || | |
Sbjct 118268 AGTAAAGTACTTTTGTGACATGTAATTGTAAGTTTCAATGGC-CTTGGCAATGTCCGCGC 118210
Query 81710 CGTGAATACCGATAGCTACACGCATAAACAT 81740
| || ||||| | |||||| | ||| | |||
Sbjct 118209 CATGGATACCAACAGCTACTCTCATGATCAT 118179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570309216605920
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