Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq32 194 2e-44 seq90 179 4e-40 seq111 159 4e-34 seq79 159 4e-34 >seq32 Length=396137 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || |||||||||||||| |||||||| || || | Sbjct 381661 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTCGAATCTTCT 381602 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||| | || || || ||||||||||| ||||| |||||||| Sbjct 381601 GATACTATTGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAA 381542 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || |||||||| |||||||||||||||| ||||| || | ||||| || Sbjct 381541 CAAAGACTCATCTTTGCTGGCAAGCAACTCGAGGATGGCCGTACTCTCTCTGACTACAAC 381482 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || |||||||| || ||| | ||||| || ||||| Sbjct 381481 ATCCAAAAGGAGTCTACTCTTCACCTCGTCCTTCGTCTCCGTGGTGG 381435 Score = 190 bits (210), Expect = 2e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 |||||||||||||| || ||||| ||||| || ||||| || ||||||||||| ||||| Sbjct 381892 ATAATGCAAATCTTCGTAAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTCGAGTCT 381833 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 ||| | ||| | || | ||| | || ||||| |||||||| || |||||||||||| Sbjct 381832 TCTGACACCATCGACAACGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGAC 381773 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || |||||| | ||||| |||||||||||||| || || | |||||| || | || || Sbjct 381772 CAACAGCGTTTGATTTTCGCTGGTAAGCAACTGGAAGACGGTCGTACTCTTTCTGATTAC 381713 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||||| ||||||||||| || | ||| | ||||| || ||||| Sbjct 381712 AACATCCAAAAAGAATCCACTCTCCACTTGGTCCTCCGTCTCCGTGGTGG 381663 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || ||||| || || |||||||| ||||| Sbjct 380977 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAGTCTTCC 380918 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || || ||||||||||| ||||| |||||||| Sbjct 380917 GACACCATCGACAACGTTAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 380858 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| |||||||||||||| ||||||| | ||||| | ||||| || Sbjct 380857 CAGCGTTTGATTTTCGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTTCCGACTACAAC 380798 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| |||||||| || ||||| | ||||| || ||||| Sbjct 380797 ATCCAAAAGGAGTCCACTCTCCACTTAGTCCTTCGTCTGCGTGGTGG 380751 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || || ||||| || ||||| || ||||| || Sbjct 381205 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAAGTTGAATCTTCC 381146 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || || ||||||||||| ||||| |||||||| Sbjct 381145 GACACCATCGATAATGTTAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAA 381086 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| |||||||||||||||||||||| ||||| || | || || || Sbjct 381085 CAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTTTCTGATTACAAC 381026 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| ||||||||||| || | ||| | ||||| || ||||| Sbjct 381025 ATCCAAAAAGAATCCACTCTCCACTTGGTCCTCCGTCTCCGTGGTGG 380979 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || |||||||| ||||| || || ||||| | Sbjct 381433 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAGACTATCACTCTCGAAGTAGAGTCTTCT 381374 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || |||||||| |||||||| ||||| |||||||| Sbjct 381373 GACACCATCGATAATGTTAAGACCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAA 381314 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||||||||||||||||||||||| | || || | ||||| || Sbjct 381313 CAAAGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGCAGAACTCTTTCTGACTACAAC 381254 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || ||||| || || ||| | ||||| || ||||| Sbjct 381253 ATTCAAAAGGAGTCTACTCTCCACCTCGTCCTTCGTCTCCGTGGTGG 381207 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || ||||||||||| || || || ||||| ||||| | Sbjct 380749 ATGCAAATCTTTGTCAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCT 380690 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || || ||||||||||| ||||| |||||||| Sbjct 380689 GACACCATCGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 380630 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || ||||||||||| | || || | | ||||| | ||||| || Sbjct 380629 CAACGTCTTATCTTCGCTGGTAAGCAGTTGGAAGACGGCAGAACCCTCTCTGACTACAAC 380570 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || | ||| | ||||| || || || Sbjct 380569 ATCCAGAAGGAGTCCACCCTCCACTTGGTCCTCCGTCTCCGTGGCGG 380523 >seq90 Length=207308 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| |||||||| ||||| || || || ||||||||||| Sbjct 159289 ATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTCC 159230 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || || ||||||||||||||||| ||||| || Sbjct 159229 GACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAA 159170 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || ||||||||||||||||| ||||| | |||||| || | || || || Sbjct 159169 CAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACTCTTTCTGATTACAAC 159110 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || ||||| || || ||| | ||||| || ||||| Sbjct 159109 ATCCAAAAGGAGTCTACTCTCCACCTTGTCCTCCGTCTCCGTGGTGG 159063 >seq111 Length=751517 Score = 159 bits (176), Expect = 4e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| ||||| || ||||| || || || ||||| ||||| || | |||| Sbjct 299039 TTCGTCAAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCATT 299098 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || ||||||||||| |||||||| ||||| || || ||||| Sbjct 299099 GACAATGTCAAGACCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAACAACGTCTT 299158 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||||||||||||||| |||| | ||||| | ||||| || |||||||| Sbjct 299159 ATCTTCGCTGGTAAGCAACTCGAAGATGGCAGAACCCTTTCTGACTACAACATCCAAAAG 299218 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || |||||||| || ||| | ||| | | ||||| Sbjct 299219 GAGTCTACTCTTCACCTTGTCCTCCGTTTGAGAGGTGG 299256 >seq79 Length=299291 Score = 159 bits (176), Expect = 4e-34 Identities = 673/1051 (64%), Gaps = 35/1051 (3%) Strand=Plus/Minus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| | ||||| | || |||| ||| | || || || | ||| || ||| Sbjct 119219 CATGAAAGCATCAGCTAAACCTTGAATGCCAAGAGCAATAGGTCTGTGACGGAAGTTACT 119160 Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834 || ||| |||||| | ||| || ||||| | || || | | |||| ||| | || Sbjct 119159 TCTCTCAGCCTCCTTTACTGGATAGAAGTTTCTGTCAATAATGACATTCAAGTTTCTAGT 119100 Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA---------TTGGT--TCCCC 80883 ||| || | ||| || || || |||| ||||| | | || | || | Sbjct 119099 AACGGCCTTGGCAACTTCGTGGAGCTTCTCAAAGTTGTACCATAAGCCTTCATCATCACT 119040 Query 80884 TTCA-CAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATC 80942 |||| |||| || |||||| || || |||| || || || ||||| ||||||| | Sbjct 119039 TTCAACAAAAGCAGGAAGGGACAAAGAAGCCAAGTTACAAACAGCCACTTCTTCAGGAGA 118980 Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 | ||||||| ||||| |||||| || ||||| || || ||||||||||||| || Sbjct 118979 AGAGTACTCGACAATTTCACAGCACAAGTTGGAAGATTTGATAGTACCCAGGTTTTGTTG 118920 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 || |||| ||| ||||| ||||||||| |||| | ||| |||| ||||| || Sbjct 118919 ATTACTCTTGCTGTTACAAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTTTG 118860 Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTC 81122 | || ||||| || | ||| | || | ||||||| | | ||||||||| Sbjct 118859 GGCCTCAAGGATAGCATACCAGAGCTTCTGAGCCTTGATAGTTCTTCTACCTTTGCCTTC 118800 Query 81123 GGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGG 81182 ||||||| | || | | || | | | || | | || | | || Sbjct 118799 TTTTTCATACTTTTCATAGAGGGCAACAAATTCGTCTCCATAGACCTCGTCCAAACCAGG 118740 Query 81183 GCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTT---CTCTACAGCCTTCATGAA 81239 ||||| ||||||||||||| ||| || ||||| || || ||||||||| Sbjct 118739 ACACTCATTAGGGCACATCAAAGTCCAATC---CTCGTTAGCCTTGACTCTCTTCATGAA 118683 Query 81240 AGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGC-GGCAGCGCGCCTCCTCATCACCCT 81298 ||| |||||||| ||||| ||||| || | |||| || | || || | ||| | Sbjct 118682 CAAGTCGGGGATCCAAAGGGCCAAGAACAAATCTCTGGCA-CGGACTTCTTCCTTACCGT 118624 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358 |||| ||||| |||| || || | | || | ||||| ||||||| |||| || Sbjct 118623 GGTTCTTTCGCAAGTCGATGAATTCAAAAACATCGTCGTGCCAAGGCTCCAAGTACATGG 118564 Query 81359 CGATCG-AC-----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAA 81412 ||| | || | |||| | ||||| |||| || || | ||||| ||| | Sbjct 118563 CGAAAGCACCTGGTCTCTTGTTA---CCACCTTGGTCAACATATCTAGCAGTGTTGTTGA 118507 Query 81413 ATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACC 81472 | || | ||||||||||| ||||| | || |||||| ||||| | ||| || | Sbjct 118506 AAACTCTCAACATAGGGACAATACCGTTAGAAGTACCGTTAGTACCGGCAATATAGGAAC 118447 Query 81473 CCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAG 81532 | |||| || | ||| ||| | ||| || ||||||| |||| || ||| | Sbjct 118446 CAGTGGCACGGATATTGTGGATACTCAAACCAATACCACCTGCAGACTTCGAGATCAAGG 118387 Query 81533 CACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGA 81592 |||| |||| || ||||| || ||||| ||| || | ||||||| | ||||| Sbjct 118386 CACAGGTCTTCAAAGTATCATAGATACCCTCAATGGAGTCATCCTTCATGTTTACCAAGA 118327 Query 81593 AACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTG 81650 |||| ||||| || || || ||| || |||||| ||| || || | || || Sbjct 118326 AACAAGACGACATTTGTGG--CTTGGGAGTACCAGCATTGTACAAAGTAGGAGAAGCATG 118269 Query 81651 AATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGG-AATATCGTCAC 81709 | | || || | |||||| | || ||||| || | | ||| ||| || | | Sbjct 118268 AGTAAAGTACTTTTGTGACATGTAATTGTAAGTTTCAATGGC-CTTGGCAATGTCCGCGC 118210 Query 81710 CGTGAATACCGATAGCTACACGCATAAACAT 81740 | || ||||| | |||||| | ||| | ||| Sbjct 118209 CATGGATACCAACAGCTACTCTCATGATCAT 118179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309216605920