Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq90 118 7e-22 seq32 118 7e-22 >seq90 Length=207308 Score = 118 bits (130), Expect = 7e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| ||||||||| ||||| ||||| ||||| || || |||| |||||||| Sbjct 159087 TGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCCTCAAGTTGC 159146 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||| ||||| || ||||| ||||| || || || | ||||||||||||| |||| || Sbjct 159147 TTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATC-TT 159205 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || || | || ||||| ||| || || | ||| || || |||||||| Sbjct 159206 GGTCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGT 159265 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || ||||| ||||| Sbjct 159266 AAGGGTCTTGACGAAAATTTGCAT 159289 >seq32 Length=396137 Score = 118 bits (130), Expect = 7e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || || ||||||||| ||||||||| ||||| || || ||||| |||| Sbjct 380760 AGACGAAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCTT 380819 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || |||||||| ||||| || || || |||||||||||||| || || | |||||| Sbjct 380820 CCATCCTCAAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCCTCC 380879 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || || |||||| | || ||||| ||| || || | ||| Sbjct 380880 TTGTCTTGGATC-TTGGTCTTAACGTTGTCGATGGTGTCGGAAGACTCGACCTCAAGGGT 380938 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||| || | || || || || || ||||| Sbjct 380939 GATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 380977 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||||||| || ||||| ||||| ||||| ||||| || || Sbjct 380988 AGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGG 381047 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || ||||| ||||| || || || |||||||||||||| || || | |||||| Sbjct 381048 CCATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCCTCC 381107 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || || ||||| || || ||||| || ||||| | || Sbjct 381108 TTGTCTTGGATC-TTGGTCTTAACATTATCGATGGTGTCGGAAGATTCAACTTCGAGAGT 381166 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||| || || || || || || || ||||| Sbjct 381167 GATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 381205 Score = 107 bits (118), Expect = 1e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||||||| || ||||| ||||| ||||| ||||| || || Sbjct 381672 AGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGA 381731 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| ||||| ||||| || || || |||||||||||||| || || | || ||| Sbjct 381732 CCGTCTTCCAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCC 381791 Query 34609 TTGTCTGTGATCTT 34622 |||||| ||||| Sbjct 381792 TTGTCTTGAATCTT 381805 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | ||||| ||||| ||| |||||| || ||||| || || || Sbjct 380523 CCGCCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 380582 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| | || ||||| || || || | ||| |||||||| || || Sbjct 380583 AGGGTTCTGCCGTCTTCCAACTGCTTACCAGCGAAGATAAGACGTTGTTGGTCTGGGGGA 380642 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || || || ||| | || ||||| ||| || Sbjct 380643 ATGCCCTCCTTGTCTTGGATC-TTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCGAC 380701 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| | || || ||||| || ||||| Sbjct 380702 CTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATTTGCAT 380749 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| ||||||||||||||| || || ||||| |||| | || || ||||| Sbjct 381231 TGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCGAGTTGC 381290 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||| ||||| || | | |||||||| || || | |||||||| || ||| || Sbjct 381291 TTACCAGCAAAGATAAGTCTTTGTTGGTCTGGGGGAATACCCTCCTTATC-CTGAATCTT 381349 Query 34624 TGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || ||||| || || ||||| ||| ||||| | || || || ||||| || Sbjct 381350 GGTCTTAACATTATCGATGGTGTCAGAAGACTCTACTTCGAGAGTGATAGTCTTACCAGT 381409 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || ||||| Sbjct 381410 GAGAGTCTTGACGAAGATTTGCAT 381433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728963262678