Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq90 118 7e-22
seq32 118 7e-22
>seq90
Length=207308
Score = 118 bits (130), Expect = 7e-22
Identities = 150/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
|||||||| ||||||||| ||||| ||||| ||||| || || |||| ||||||||
Sbjct 159087 TGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCCTCAAGTTGC 159146
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623
||||| ||||| || ||||| ||||| || || || | ||||||||||||| |||| ||
Sbjct 159147 TTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATC-TT 159205
Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682
|| || || | || ||||| ||| || || | ||| || || ||||||||
Sbjct 159206 GGTCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGT 159265
Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706
| || || || ||||| |||||
Sbjct 159266 AAGGGTCTTGACGAAAATTTGCAT 159289
>seq32
Length=396137
Score = 118 bits (130), Expect = 7e-22
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | || || ||||||||| ||||||||| ||||| || || ||||| ||||
Sbjct 380760 AGACGAAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCTT 380819
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || |||||||| ||||| || || || |||||||||||||| || || | ||||||
Sbjct 380820 CCATCCTCAAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCCTCC 380879
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || || |||||| | || ||||| ||| || || | |||
Sbjct 380880 TTGTCTTGGATC-TTGGTCTTAACGTTGTCGATGGTGTCGGAAGACTCGACCTCAAGGGT 380938
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || ||||| || | || || || || || |||||
Sbjct 380939 GATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 380977
Score = 113 bits (124), Expect = 3e-20
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| ||||||||| || ||||| ||||| ||||| ||||| || ||
Sbjct 380988 AGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGG 381047
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || ||||| ||||| || || || |||||||||||||| || || | ||||||
Sbjct 381048 CCATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCCTCC 381107
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || || ||||| || || ||||| || ||||| | ||
Sbjct 381108 TTGTCTTGGATC-TTGGTCTTAACATTATCGATGGTGTCGGAAGATTCAACTTCGAGAGT 381166
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || ||||| || || || || || || || |||||
Sbjct 381167 GATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 381205
Score = 107 bits (118), Expect = 1e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| ||||||||| || ||||| ||||| ||||| ||||| || ||
Sbjct 381672 AGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGA 381731
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| ||||| ||||| || || || |||||||||||||| || || | || |||
Sbjct 381732 CCGTCTTCCAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCC 381791
Query 34609 TTGTCTGTGATCTT 34622
|||||| |||||
Sbjct 381792 TTGTCTTGAATCTT 381805
Score = 98.7 bits (108), Expect = 6e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | ||||| | ||||| ||||| ||| |||||| || ||||| || || ||
Sbjct 380523 CCGCCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 380582
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| |||| ||||||| | || ||||| || || || | ||| |||||||| || ||
Sbjct 380583 AGGGTTCTGCCGTCTTCCAACTGCTTACCAGCGAAGATAAGACGTTGTTGGTCTGGGGGA 380642
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| |||| || || || ||| | || ||||| ||| ||
Sbjct 380643 ATGCCCTCCTTGTCTTGGATC-TTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCGAC 380701
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | ||| || || || ||||| | || || ||||| || |||||
Sbjct 380702 CTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATTTGCAT 380749
Score = 82.4 bits (90), Expect = 5e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
|||||||| ||||||||||||||| || || ||||| |||| | || || |||||
Sbjct 381231 TGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCGAGTTGC 381290
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623
||||| ||||| || | | |||||||| || || | |||||||| || ||| ||
Sbjct 381291 TTACCAGCAAAGATAAGTCTTTGTTGGTCTGGGGGAATACCCTCCTTATC-CTGAATCTT 381349
Query 34624 TGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682
|| ||||| || || ||||| ||| ||||| | || || || ||||| ||
Sbjct 381350 GGTCTTAACATTATCGATGGTGTCAGAAGACTCTACTTCGAGAGTGATAGTCTTACCAGT 381409
Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706
| || || || || || |||||
Sbjct 381410 GAGAGTCTTGACGAAGATTTGCAT 381433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314728963262678
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |