Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq32 131 1e-25
seq90 104 2e-17
seq111 96.9 3e-15
>seq32
Length=396137
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || ||||| || || || || ||| | || |||||||| || || | ||
Sbjct 381889 ATGCAAATCTTCGTAAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTCGAGTCTTCT 381830
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || ||||||||||| ||||| || || || || |||
Sbjct 381829 GACACCATCGACAACGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 381770
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||||| || | ||| || || ||| |||||||| || || |||| |||||||||
Sbjct 381769 CAGCGTTTGATTTTCGCTGGTAAGCAACTGGAAGACGGTCGTACTCTTTCTGATTACAAC 381710
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||| || || || | || ||||| | ||| | || ||||| ||
Sbjct 381709 ATCCAAAAAGAATCCACTCTCCACTTGGTCCTCCGTCTCCGTGGTGGTAT 381660
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || ||||||||||||||| | || || || || || || | ||
Sbjct 380749 ATGCAAATCTTTGTCAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCT 380690
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || || |||||||| || ||||| || || || |||
Sbjct 380689 GACACCATCGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 380630
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| ||| | || | ||| || || || ||||||||| | ||| | || || ||||||
Sbjct 380629 CAACGTCTTATCTTCGCTGGTAAGCAGTTGGAAGACGGCAGAACCCTCTCTGACTACAAC 380570
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || |||||||| ||| | || ||||| | ||| | || || ||
Sbjct 380569 ATCCAGAAGGAGTCCACCCTCCACTTGGTCCTCCGTCTCCGTGGCGG 380523
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || || || || ||| | || || ||||| || || | |||
Sbjct 380977 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAGTCTTCC 380918
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || |||||||| || ||||| || || || |||
Sbjct 380917 GACACCATCGACAACGTTAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 380858
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||||| || | ||| || || ||| | || || | ||| ||||||| ||||||
Sbjct 380857 CAGCGTTTGATTTTCGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTTCCGACTACAAC 380798
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||||||||| || | || || || | ||| |||| ||||| ||
Sbjct 380797 ATCCAAAAGGAGTCCACTCTCCACTTAGTCCTTCGTCTGCGTGGTGGTAT 380748
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || |||| || ||| | || ||||| ||||| ||| | |||
Sbjct 381205 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAAGTTGAATCTTCC 381146
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || |||||||| || || || || || || |||
Sbjct 381145 GACACCATCGATAATGTTAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAA 381086
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||||| || | ||| || || ||| | || || | || |||| |||||||||
Sbjct 381085 CAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTTTCTGATTACAAC 381026
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||| || || || | || ||||| | ||| | || ||||| ||
Sbjct 381025 ATCCAAAAAGAATCCACTCTCCACTTGGTCCTCCGTCTCCGTGGTGGTAT 380976
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || |||| |||||| ||||||| ||||| || ||| | ||
Sbjct 381661 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTCGAATCTTCT 381602
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | ||||| || || |||||||| || || || || || || |||
Sbjct 381601 GATACTATTGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAA 381542
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| | | || | || ||||| ||| | || || | || | || || ||||||
Sbjct 381541 CAAAGACTCATCTTTGCTGGCAAGCAACTCGAGGATGGCCGTACTCTCTCTGACTACAAC 381482
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||||||||| || | || | || | ||| | || ||||| ||
Sbjct 381481 ATCCAAAAGGAGTCTACTCTTCACCTCGTCCTTCGTCTCCGTGGTGGTAT 381432
>seq90
Length=207308
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || || ||||| ||| | || || || || || || | |||
Sbjct 159289 ATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTCC 159230
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || || |||||||| || || || || || ||||||
Sbjct 159229 GACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAA 159170
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| ||||| || | || || || ||| | || ||| || || |||| |||||||||
Sbjct 159169 CAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACTCTTTCTGATTACAAC 159110
Query 27168 ATTCAAAAGGAGTCGAC 27184
|| ||||||||||| ||
Sbjct 159109 ATCCAAAAGGAGTCTAC 159093
>seq111
Length=751517
Score = 96.9 bits (106), Expect = 3e-15
Identities = 154/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056
|| || || || || || || ||| | || || || || || || | |||||| | |||
Sbjct 299039 TTCGTCAAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCATT 299098
Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116
|| | ||||| || || || ||||| ||||| || || || |||||||| ||| |
Sbjct 299099 GACAATGTCAAGACCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAACAACGTCTT 299158
Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176
|| | ||| || || ||| | ||||| | ||| |||| || |||||||| ||||||
Sbjct 299159 ATCTTCGCTGGTAAGCAACTCGAAGATGGCAGAACCCTTTCTGACTACAACATCCAAAAG 299218
Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| || | || | || | |||||| | ||||| ||
Sbjct 299219 GAGTCTACTCTTCACCTTGTCCTCCGTTTGAGAGGTGGTAT 299259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434917497544320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |