Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq87 131 1e-25 >seq87 Length=222757 Score = 131 bits (144), Expect = 1e-25 Identities = 462/709 (65%), Gaps = 22/709 (3%) Strand=Plus/Plus Query 118357 TTGTAGTTTTCCAAAATAAAATCTTCAAACTTAAAGTCTTCTATATTTTTGATATC-CTT 118415 ||||| ||| | ||||||||||||| | |||| || || |||| | | | ||| ||| Sbjct 40344 TTGTATCCTTCAACAATAAAATCTTCATATCTAAAATCGTCAATATCTGTTACATCTCTT 40403 Query 118416 GTTTATGGATAGTGTGGGAAACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTGGCTC 118475 | | | || |||||||| ||| | || || ||||| | | |||| || Sbjct 40404 GCAAAACG-TAAAGTGGGAAAGTTTGTAGGTGTTCGTGCGATTTGGACTCTAAGTGCGTC 40462 Query 118476 AATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCA-GGTGTAA 118534 || || | |||||| |||||||| || |||||||| ||||| || ||| | || Sbjct 40463 AACATGGTCAGCATAGACGTGAGCATCTCCCATTGTATGGATGAAATCGCCACACTCTAT 40522 Query 118535 GCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAA 118594 || | | ||||| ||||| | ||| | ||| |||| || | ||| || || | Sbjct 40523 TCCACAT-ACTTGAGCGATCATCTTTGTTAGCAACGCGTAGGAAGCGATATTGAAGGGGA 40581 Query 118595 CACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTC-------CC-- 118645 |||||| |||||||| ||| ||||||| |||||| |||||||| || Sbjct 40582 CACCCAAGCCCATGTCACAACTTCTTTGGTACAGTTGGCAGGAGAGCTCTTTTCTGCCAT 40641 Query 118646 --CGTTTGC-AACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCA 118702 || || ||||||||||||| | | ||||| || || ||| |||| | ||| Sbjct 40642 TACGAAAGCTAACATAAAACTGAGAGAATACATGACAGGGTGGTAGAGCCATATCATTCA 40701 Query 118703 GTTGGGCAGGATTCCAGGCTGTTAAAACATGCCTTCTGCTATATGG-TTCTACCTGTATA 118761 | |||||| ||||| || | | | | ||||| |||||| ||| || | Sbjct 40702 TATCGGCAGGGTTCCATGCCGACATGATAATCCTTCGATCATATGGAGTCT--CTTTGAT 40759 Query 118762 CCCTCAATTAAATTCTG-AATCTGATCCACACCCTTTCCAGTATACTGAGACTCGCATCC 118820 || | | | |||| | ||||||||| |||||||||||||| | | || || | Sbjct 40760 TTTTCGAATCACATCTGCCAGCTGATCCACTCCCTTTCCAGTATAATCTGTATCACAGTC 40819 Query 118821 TTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATCTCCCTG 118880 || ||||| || |||||| | ||||||||| ||||| ||||| || |||||||| | Sbjct 40820 TTCATATTTGGCACCAAAATGACGCCATTGAAATCCATAGACAGGTCCTAGATCTCCTTC 40879 Query 118881 GGACCTAAAATCTAAACCTACTTTTCTCT-GAAATTCTTTTGACCCATTAGCATTCCAAA 118939 | ||| | || ||| | ||| ||| |||| ||| | ||||| ||| ||| | Sbjct 40880 GCGTCTATGCTGTAGTCCT-CGTTTATCTAGAAACTCTCTGCTTCCATTTCCATCCCATA 40938 Query 118940 TAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAAAAACCAAAGAA 118999 | ||| ||| | | | || || || | ||||| || ||| |||||| | | Sbjct 40939 TGTGAACGCCTCTATCCGAGAGTAATTTGGAATCGGTAGAGCCCTTTACAAACCATAACA 40998 Query 119000 GCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGG 119048 |||| || | || ||| | | ||||| |||| || || || || || Sbjct 40999 GCTCTTCTAAGACACCTTTAAAGTAAACTCTTTTCGTAGTTAATAGAGG 41047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414475961461624