Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq32 122 6e-23
seq90 111 1e-19
seq111 84.2 1e-11
>seq32
Length=396137
Score = 122 bits (134), Expect = 6e-23
Identities = 148/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || ||||| || ||||| || || || || |||||||| || || || || |
Sbjct 381890 AATGCAAATCTTCGTAAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTCGAGTCTTC 381831
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||||| | || || | || || || | || ||||| |||||| | || ||||| |
Sbjct 381830 TGACACCATCGACAACGTCAAGACCAAGA-TTCAAGACAAGGAAGGTATTCCTCCAGACC 381772
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
|||||||||| || || || || || ||||||||||||| || ||| | |||||||
Sbjct 381771 AACAGCGTTTGATTTTCGCTGGTAAGCAACTGGAAGACGGTCGTACTCTTTCTGATTACA 381712
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| |||||||| |||||
Sbjct 381711 ACATCCAAAAAGAATCCAC 381693
Score = 116 bits (128), Expect = 3e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || ||| | || || || || ||||||||||||||||| || |
Sbjct 381205 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAAGTTGAATCTTCC 381146
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| |||| || || | | ||||| || ||| | || ||||| ||
Sbjct 381145 GACACCATCGATAATGTTAAGACCAAGA-TCCAAGACAAGGAGGGTATTCCCCCAGACCA 381087
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||||||| || || || || || ||||| || || | || ||| | ||||||||
Sbjct 381086 ACAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTTTCTGATTACAA 381027
Query 23790 CATACAAAAAGAGTCCAC 23807
||| |||||||| |||||
Sbjct 381026 CATCCAAAAAGAATCCAC 381009
Score = 96.9 bits (106), Expect = 2e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || |||||||| || || || ||||| || || || || || |
Sbjct 380977 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAGTCTTCC 380918
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || || |||| || || | | ||||| || || | || ||||| ||
Sbjct 380917 GACACCATCGACAACGTTAAGACCAAGA-TCCAAGACAAGGAGGGCATTCCCCCAGACCA 380859
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||||||| || || || || || ||||| || || | | | || | ||| |||||
Sbjct 380858 ACAGCGTTTGATTTTCGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTTCCGACTACAA 380799
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
||| ||||| |||||||| | || |||||
Sbjct 380798 CATCCAAAAGGAGTCCACTCTCCACTTAGT 380769
Score = 89.7 bits (98), Expect = 3e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || || ||||| || || || |||||||||||||| || || |
Sbjct 381433 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAGACTATCACTCTCGAAGTAGAGTCTTCT 381374
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| |||| || || ||| || || || ||| | || ||||| ||
Sbjct 381373 GACACCATCGATAATGTTAAGAC-CAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCA 381315
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||| || || ||||| || || | | ||| | || |||||
Sbjct 381314 ACAAAGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGCAGAACTCTTTCTGACTACAA 381255
Query 23790 CATACAAAAAGAGTCCAC 23807
||| ||||| ||||| ||
Sbjct 381254 CATTCAAAAGGAGTCTAC 381237
>seq90
Length=207308
Score = 111 bits (122), Expect = 1e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||| || ||||| || || || || ||||| ||||| ||||| || |
Sbjct 159289 ATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTCC 159230
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || || || | | ||||| || || | || ||||||||
Sbjct 159229 GACACCATCGACAATGTCAAGACCAAGA-TCCAAGACAAGGAGGGAATTCCCCCAGATCA 159171
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||||| || ||||| || || ||||| || |||| || ||| | ||||||||
Sbjct 159170 ACAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACTCTTTCTGATTACAA 159111
Query 23790 CATACAAAAAGAGTCCAC 23807
||| ||||| ||||| ||
Sbjct 159110 CATCCAAAAGGAGTCTAC 159093
>seq111
Length=751517
Score = 84.2 bits (92), Expect = 1e-11
Identities = 134/190 (71%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 23619 TTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGT 23678
|||||| || ||||| || || || || ||||| ||||| || || || | ||||| |
Sbjct 299038 TTTCGTCAAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCAT 299097
Query 23679 TGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTT 23737
||| ||| | || || || | | ||||| ||||| | || ||||||||||| |||
Sbjct 299098 TGACAATGTCAAGACCAAGA-TCCAGGACAAGGAAGGAATTCCCCCAGATCAACAACGTC 299156
Query 23738 TAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAA 23797
| || || || || || ||||| ||||| | | || | || |||||||| ||||
Sbjct 299157 TTATCTTCGCTGGTAAGCAACTCGAAGATGGCAGAACCCTTTCTGACTACAACATCCAAA 299216
Query 23798 AAGAGTCCAC 23807
| ||||| ||
Sbjct 299217 AGGAGTCTAC 299226
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338008916164328
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |