Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq32 170 5e-37
seq111 150 4e-31
seq90 143 6e-29
seq126 104 6e-17
>seq32
Length=396137
Score = 170 bits (188), Expect = 5e-37
Identities = 165/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | ||||||||||||||||||||||| |||||||| | | ||| | |||||
Sbjct 380994 AGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCCATCC 381053
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| |||||||| || | || |||||||| || |||||||| |||||||||
Sbjct 381054 TCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTCT 381113
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| || | ||| || || | ||||| |||
Sbjct 381114 TGGATCTTGGTCTTAACATTATCGATGGTGTCGGAAGATTCAACTTCGAGAGTGATGGTC 381173
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || ||||| || || | ||| | ||||||
Sbjct 381174 TTACCAGTCAAGGTCTTGACGAAGATTTGCAT 381205
Score = 161 bits (178), Expect = 2e-34
Identities = 174/229 (76%), Gaps = 1/229 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | ||||||||||||||||||||||| |||||||| | | ||| | || |||
Sbjct 381678 AGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCT 381737
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| |||||||| || | || |||||||| || ||||||||||||||||||
Sbjct 381738 TCCAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCT 381797
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| || ||||||||||| || | || || || | ||||| |||
Sbjct 381798 TGAATCTTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCAAGAGTGATGGTC 381857
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGGTTACTTACCG 225730
|| || || | || |||| ||| | ||||||| | |||| |||| ||
Sbjct 381858 TTACCAGTAAGGGTCTTTACGAAGATTTGCATTATGAGGTT-CTTATCG 381905
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | |||||| ||||| || || |||| ||||| || | | ||||| || |||
Sbjct 380538 AGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCTGCCGTCT 380597
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| |||||||||||||| ||||||||||| || ||||| || |||||||||
Sbjct 380598 TCCAACTGCTTACCAGCGAAGATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCT 380657
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| || | || || || | ||||| |||
Sbjct 380658 TGGATCTTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATGGTC 380717
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||| ||| || | || | ||||||
Sbjct 380718 TTGCCGGTCAGAGTCTTGACAAAGATTTGCAT 380749
Score = 152 bits (168), Expect = 1e-31
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||||||||| || || ||||| | ||||| || | | |||||| |||||
Sbjct 381222 AGGACGAGGTGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTGCCATCC 381281
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| ||||| |||||||||| ||||||||| || |||||||| ||||| ||
Sbjct 381282 TCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGGGGAATACCCTCCTTATCC 381341
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| ||| ||||||||||| || | || || || | ||||| |||
Sbjct 381342 TGAATCTTGGTCTTAACATTATCGATGGTGTCAGAAGACTCTACTTCGAGAGTGATAGTC 381401
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || | ||| || | ||| | ||||||
Sbjct 381402 TTACCAGTGAGAGTCTTGACGAAGATTTGCAT 381433
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||| ||||| || || ||||||| ||||| || | | ||| | |||||
Sbjct 381450 AGGACGAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCC 381509
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| ||||| ||||| |||| ||||||||| || |||||||| |||||||||
Sbjct 381510 TCGAGTTGCTTGCCAGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATACCCTCCTTGTCT 381569
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| || || || || || | ||| || || | || || |||
Sbjct 381570 TGGATCTTGGTCTTGACATTGTCAATAGTATCAGAAGATTCGACCTCAAGGGTAATAGTC 381629
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| || || | ||| | ||||||
Sbjct 381630 TTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 381661
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | |||||||||||| || ||||||| ||||| |||| | ||||| |||||
Sbjct 380766 AGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCATCC 380825
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| |||||||| || | || |||||||| || ||||| || |||||||||
Sbjct 380826 TCAAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCT 380885
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| || | || || || | ||||| |||
Sbjct 380886 TGGATCTTGGTCTTAACGTTGTCGATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTC 380945
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || | || || | ||| | ||||||
Sbjct 380946 TTACCAGTGAGGGTCTTGACGAAGATTTGCAT 380977
>seq111
Length=751517
Score = 150 bits (166), Expect = 4e-31
Identities = 146/188 (78%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||||||||| ||||| || || ||||||| ||||| || | | ||||| ||||||
Sbjct 299241 AGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTGCCATCT 299182
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| |||||||||||||| |||||||| || || ||||| |||||||||||
Sbjct 299181 TCGAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCC 299122
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| || |||||||| || | || || || | ||||| |||
Sbjct 299121 TGGATCTTGGTCTTGACATTGTCAATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTC 299062
Query 225682 TTGCCCGT 225689
|| || ||
Sbjct 299061 TTACCAGT 299054
>seq90
Length=207308
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||||||||||||||| || || ||||||| |||||||| | | ||| | || ||
Sbjct 159078 AGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCC 159137
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| ||||| ||||| | |||||||| || || ||||| || |||||||||
Sbjct 159138 TCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCT 159197
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| || | || || || | ||||| |||
Sbjct 159198 TGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 159257
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || | || || | ||| | ||||||
Sbjct 159258 TTACCGGTAAGGGTCTTGACGAAAATTTGCAT 159289
>seq126
Length=28808
Score = 104 bits (114), Expect = 6e-17
Identities = 196/287 (68%), Gaps = 6/287 (2%)
Strand=Plus/Minus
Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATA 7503
|| ||| ||||||||| || ||| |||| | ||||||||| || ||| ||||||
Sbjct 7102 TTGTATATAATATTTGCTGTATTTGCTGGATTAATAGGTACTGCTTTAAGTATAATTATA 7043
Query 7504 AGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAAC 7563
| ||||||||||| | || || | |||||||| |||| | ||| | | ||
Sbjct 7042 CGTTTAGAATTAGCAGGACCAAGTCCACAAATATTATTCCATAATGGGCAATTATTTAAT 6983
Query 7564 GTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATA 7623
|| |||| | || ||||| | | |||||||||||||| |||||||| ||||| |
Sbjct 6982 GTAGTTATATCTGCACATGCTGTAATGATGATTTTCTTTTTAGTTATGCC---TATGACA 6926
Query 7624 GGCGGTTTC---GGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680
|| ||| | ||| | || ||||| |||||| | |||||| |||||| |||
Sbjct 6925 ATGGGATTCTTTGCAAACTATTTAGTTCCATTAATGTTAGGTGCTTTAGATATGAGTTTC 6866
Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727
|| | |||| ||| || || |||||| || || || |||||
Sbjct 6865 CCTCGTATTAATAATGTAGCATTCTGATTATTAGTTCCATCATTATT 6819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192528663635204
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |