Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq78 190 2e-43 >seq78 Length=1347436 Score = 190 bits (210), Expect = 2e-43 Identities = 592/906 (65%), Gaps = 29/906 (3%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 ||||| ||||||||| || || |||| ||| |||||||||||||| || || | Sbjct 284247 ACACCTGCTTTTTGGTAGTCAGAGACTCTCTTCTCGAAGAAATTAGTCTTACCAGAGAGA 284306 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTA----ATGTTTTTCACACTT 4363 || || || ||||| ||||| || |||||||| || ||||| |||| || || Sbjct 284307 GAGATGTTCTCCATGAAATCGAAGGGATTAGTAGCATTGTAGACCTTGTTGTTTCCA--- 284363 Query 4364 TAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAG-TTCGCAGT 4422 || | | | |||| |||||| ||||| || || || || | |||||| || ||| | Sbjct 284364 -AGGGAAAGCAATAATCTGTCAGCGACAAACTCAATGTATTGACACATGAGCTTAGCA-T 284421 Query 4423 TAATTCCAATTAATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACG 4481 | ||||||| | || ||| || | || | ||||| || || | ||| ||| || Sbjct 284422 TCATTCCAAGAAGACT-ACATGGCAAGGCATCAGTCAAGAATTCCTTTTCAATACCGACA 284480 Query 4482 GCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAAC 4541 ||||| || || || | || | | || ||| | || || | || ||||| Sbjct 284481 GCTTCAGTAATAATCTTTTCAACAACAGACTTCTTAGGTCTGTTGACAAGGTGGCCAAAA 284540 Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 | ||||| || |||||| |||| ||||| || | ||||| || ||||| || Sbjct 284541 AGCAAACAAGCGAAATCAGTGTGCATGCCTTCATCACGAGAAATCAACTCATTAGAGAAA 284600 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 || || || ||||| | ||| | ||| || | |||||| ||| |||||||| ||||| Sbjct 284601 GTCAAACCAGGCATAAGACCACGCTTCTTCAACCAAAAGATACTAGCAAATGAACCAGAG 284660 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG 4721 ||||| || || || || || || || || || | || | | || | | || Sbjct 284661 AAGAAGATACCCTCGACAGCAGCGAAAGCAACGAGACG---CTCAGCAAAGGTAGATTGA 284717 Query 4722 TCTTTA---ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT 4778 || | | ||||| ||| ||||||| ||| || ||||||| || ||||| | | Sbjct 284718 TCATCAGAGATCCAAGTTAGGGCCCAGTCAGCCTTCTTCTTAATACAAGGAATGTTATCA 284777 Query 4779 ATAGCGTTAAATAA----TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAG 4834 ||||| | || || || | | || || |||| |||||||| || || || Sbjct 284778 ATAGCATGGAACAAGAAGTTAGCCTCCTTAGCAT---CCTTG-ATATAAGTATCAATAAG 284833 Query 4835 TAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCT 4894 || | || | |||| ||| ||||| || || || || |||||||| || || | Sbjct 284834 TAAGGAGTAAGTCTCAGCATGGATATTCTCCATCATGATTTGGAATCCGTAGAAACACTT 284893 Query 4895 AGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACC 4954 || || | | || || || | | ||||| || || | ||| || || || ||||| Sbjct 284894 GGCCTCAGGAATCTGGACCTCACCAGAGAATCTCTCAACAAGGTTCTCATTGACAATACC 284953 Query 4955 GTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA- 5013 || ||| ||||| || || | ||| |||| |||||| | || ||| |||| Sbjct 284954 ATCGGAGGCAGCAAAGAAAGCGAGCACACGAGAGATAAAGAATCTCTCATCATCATTAAG 285013 Query 5014 --GTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGA 5071 | | || ||||| | ||| || | ||||| |||||| ||||||| || || Sbjct 285014 ACGGTGTTCCCAGTCACTAATATCCTTTCCAAGATCAATCTCTTCAGCAGTCCAGAAAGA 285073 Query 5072 CGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 || || |||| |||||||| ||| || ||| | |||| || || | | |||||| Sbjct 285074 GGCCTCAGCTTGCTTGTACATTTGCCAGATCTCATGGTACTTGATAGGGAACAAGACAAA 285133 Query 5132 TCTGTT 5137 |||||| Sbjct 285134 TCTGTT 285139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048736025278