Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq32 223 7e-53 seq90 179 8e-40 seq111 143 6e-29 seq89 93.3 9e-14 seq74 93.3 9e-14 >seq32 Length=396137 Score = 223 bits (246), Expect = 7e-53 Identities = 186/228 (82%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | ||| |||||||||||||||||| |||| Sbjct 380978 ACCACCACGGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGA 381037 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||||||||| ||||| || || || || |||||||| |||||||| || Sbjct 381038 AAGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGG 381097 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||||||||||||| | || || ||||||| ||||| |||| ||| || Sbjct 381098 AATACCCTCCTTGTCTTGGATCTTGGTCTTAACATTATCGATGGTGTCGGAAGATTCAAC 381157 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||||||| |||||||| ||||| ||||| ||||| || ||||| Sbjct 381158 TTCGAGAGTGATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 381205 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | ||| |||||||||||||||||| |||| Sbjct 381662 ACCACCACGGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGA 381721 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || || || || ||||| || || || || |||||||| |||||||| || Sbjct 381722 AAGAGTACGACCGTCTTCCAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGG 381781 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||||||||| ||||| | || ||| | ||||| ||||| |||| ||||| Sbjct 381782 AATACCTTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCGAC 381841 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || |||||||| |||||||| || | ||||| ||||| || |||||| Sbjct 381842 CTCAAGAGTGATGGTCTTACCAGTAAGGGTCTTTACGAAGATTTGCATT 381890 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| || | || | ||| || ||||||||||||||||| | Sbjct 380750 ACCACCACGCAGACGAAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 380809 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | |||||||| ||||| || || || || |||||||| |||||||| || Sbjct 380810 AAGGGTTCTTCCATCCTCAAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGG 380869 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||||||||||||| | || ||| | ||||| ||||| |||| ||||| Sbjct 380870 AATGCCCTCCTTGTCTTGGATCTTGGTCTTAACGTTGTCGATGGTGTCGGAAGACTCGAC 380929 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| |||||||| || | ||||| ||||| || ||||| Sbjct 380930 CTCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 380977 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | || || ||||| ||||||||||||| Sbjct 381206 ACCACCACGGAGACGAAGGACGAGGTGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 381265 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | ||||||||| ||||| || || |||||||| | | ||||||||| || Sbjct 381266 AAGAGTTCTGCCATCCTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGGGG 381325 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||| || || ||||| | || || ||||||| ||||| |||| || || Sbjct 381326 AATACCCTCCTTATCCTGAATCTTGGTCTTAACATTATCGATGGTGTCAGAAGACTCTAC 381385 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||||||| |||||||| || | |||||| ||||| || ||||| Sbjct 381386 TTCGAGAGTGATAGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 381433 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | || || ||||||||||||||||||| Sbjct 381434 ACCACCACGGAGACGAAGGACGAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGA 381493 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| ||||| || || |||||||| | | ||||||||| || Sbjct 381494 GAGAGTACGGCCATCCTCGAGTTGCTTGCCAGCAAAGATGAGTCTTTGTTGGTCTGGGGG 381553 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||||||||||||| | || || | || ||||| || |||| |||||| Sbjct 381554 AATACCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCAATAGTATCAGAAGATTCGAC 381613 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || ||||| ||||| ||||| || ||||| Sbjct 381614 CTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 381661 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || |||| || | ||| || || |||||||||||||||| Sbjct 380522 ACCGCCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 380581 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||| || || | || || || || ||||| | |||||||||||| || Sbjct 380582 GAGGGTTCTGCCGTCTTCCAACTGCTTACCAGCGAAGATAAGACGTTGTTGGTCTGGGGG 380641 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||||||||||||| | || ||| | ||||| ||||| |||| ||||| Sbjct 380642 AATGCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCGAC 380701 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || |||| |||||| || || || ||||| Sbjct 380702 CTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATTTGCAT 380749 >seq90 Length=207308 Score = 179 bits (198), Expect = 8e-40 Identities = 183/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | || || |||||||||||||| |||| Sbjct 159062 ACCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGA 159121 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || || ||||| ||||| || || |||||||||||||||||||| || || Sbjct 159122 AAGAGTACGACCGTCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGG 159181 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||||||||||||| | || || | ||||| ||||| |||| || || Sbjct 159182 AATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGACTCAAC 159241 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATACA 283110 ||||| ||||| |||||||| || | ||||| ||||| || ||||| | | ||||| Sbjct 159242 CTCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCATCGTTAAATACA 159300 >seq111 Length=751517 Score = 143 bits (158), Expect = 6e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||||||||||||||||| ||| || | |||||| || ||||| || || || ||| Sbjct 299220 TCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTGCCATCTTCGAGTTGCTTACCAGCGAAG 299161 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||||||||| || ||||| || |||||||| |||||||| | || || | Sbjct 299160 ATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTG 299101 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| |||| ||||| ||||| ||||| |||||||| || | ||||| ||| Sbjct 299100 TCAATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACG 299041 Query 283089 AA 283090 || Sbjct 299040 AA 299039 >seq89 Length=907189 Score = 93.3 bits (102), Expect = 9e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 317026 GTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCA 317085 || ||||| || || | |||||||| |||| || ||||| || || ||||| |||||| Sbjct 537362 GTGGGGAAACCCTCGACTTGACCGTTGGCAATAGCTCTCATAAGAGTAGACTTACCAGCA 537421 Query 317086 CCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTC 317145 || || || || || |||||||| || | ||| ||| | |||| ||| Sbjct 537422 CCGTTAGGACCACAGAGACCATATCGGCGGGCACGCTTAAGACGGAGTTGGGTACGGTTA 537481 Query 317146 AGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201 || | ||||| ||||||| || |||||||||||||| | ||||| |||||| || Sbjct 537482 AGCAAGATCTTGGCACCATAAGCAAGAGAGAACTCACAGTTACACAAGTCCTCACC 537537 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 315606 AACGGCCCAGTTTTCGACACACACGTTTTTAACAAATTCGCCACTGTGACTAATCACCAC 315665 |||||||||| ||| || || ||| || ||||| || ||| |||| | || Sbjct 535912 AACGGCCCAGACTTCTTCAGTCAAGTTCTTGGTGAATTCAGCAGAGTGTGTAATGATAAC 535971 Query 315666 CACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCAC 315725 || |||||| ||| | ||| | |||| | || ||||||||| || | ||| | Sbjct 535972 AACACCACCTTGGAATTCCTTGATAGCCTTGGACAAAGCACCGAGAGAGTCTCTGTCAAG 536031 Query 315726 AAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAGCGGCGCCGAT 315785 | | ||||| || || ||||||||||| | ||| || ||||||| | || | | Sbjct 536032 ATAATTGGTAGGTTCGTCAAGAACGATCAAGTGAGGACGTTGCCAAGTACAAGCAGCCAA 536091 Query 315786 AACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATGAG 315835 || ||||| | ||||| ||||| || || |||||||| ||||| |||| Sbjct 536092 GACAAGCTTGACCTTTTGACCACCGGAAAGACCACGGATACGAGAGTGAG 536141 >seq74 Length=316158 Score = 93.3 bits (102), Expect = 9e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| |||||||| | ||| | |||||| ||||| ||||| || || ||||||||| Sbjct 306803 GGGAAACCTTCCAATTTACCATCAGCAATCGATCTCATTAGTGTAGATTTACCAGCACCA 306862 Query 317089 TTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAG-ATTAAAACGGGTGTTGTTCAG 317147 || | |||||||| || || |||| |||||| || |||| || || || ||||| Sbjct 306863 TTACGACCGCAAAGGCCGTAACGATGTCCCTTGAATAGTCTTAAGAC-AGTTTTATTCAG 306921 Query 317148 AAGAATCTTACCACCATATGCCAGAGAGAA 317177 ||| || | |||||||| || ||||| || Sbjct 306922 AAGCATTCTGCCACCATAGGCAAGAGAAAA 306951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046736973716564