Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq32 127 1e-24 seq90 123 2e-23 seq111 102 6e-17 >seq32 Length=396137 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| || ||||||||||||||||| | || || |||| ||| Sbjct 381681 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCTTCC 381740 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || || || ||||||||||| || |||| ||| | ||||||||| || Sbjct 381741 AGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGA 381800 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || || ||||| | || || ||||| Sbjct 381801 ATCTTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCAAGAGTGATGGTCTTA 381860 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || || |||||||| |||||||||||||| ||| Sbjct 381861 CCAGTAAGGGTCTTTACGAAGATTTGCATTATG 381893 Score = 118 bits (130), Expect = 8e-22 Identities = 153/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 44134 GTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCGTCCAGC 44191 ||| || ||| |||||||||||||||||| |||| || || || | || || || Sbjct 380774 GTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAG--GGTTCTTCCATCCTCAAGT 380831 Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| || || || ||||||||||| || |||| || | || ||||| || ||| Sbjct 380832 TGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATC 380891 Query 44252 TTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCC 44310 || ||| || ||| | |||||||||| || || ||||| | || || ||||| || Sbjct 380892 TTGGTCTT-AACGTTGTCGATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTCTTACC 380950 Query 44311 CGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| |||||||||||||| Sbjct 380951 AGTGAGGGTCTTGACGAAGATTTGCAT 380977 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| || ||||||||||||||||| | || || | || || Sbjct 380997 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCCATCCTCG 381056 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || || || ||||||||||| || |||| || | ||| ||||| || Sbjct 381057 AGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGG 381116 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| ||||| || || | || || ||||| Sbjct 381117 ATCTTGGTCTTAACATTATCGATGGTGTCGGAAGATTCAACTTCGAGAGTGATGGTCTTA 381176 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | |||||| |||||||||||||| Sbjct 381177 CCAGTCAAGGTCTTGACGAAGATTTGCAT 381205 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||||||||||||||| || | ||| || | || || Sbjct 381453 ACGAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCCTCG 381512 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||| | | || || |||| || | ||| ||||| || Sbjct 381513 AGTTGCTTGCCAGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGG 381572 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | || || || | ||||| ||||| | ||||| |||| Sbjct 381573 ATCTTGGTCTTGACATTGT--CAATAGTATCAGAAGATTCGACCTCAAGGGTAATAGTCT 381630 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | |||||| |||||||||||||| Sbjct 381631 TGCCAGTCAAGGTCTTGACGAAGATTTGCAT 381661 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCGT 44186 |||| ||| || ||| |||||| ||||||||||| || | ||| || || |||| | Sbjct 380541 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAG--GGTTCTGCCGTCTT 380598 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||| |||||| || || ||||| | ||| || || |||| || | || ||||| || Sbjct 380599 CCAACTGCTTACCAGCGAAGATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTT 380658 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| | | | |||||||| | || || ||||| | || || |||| Sbjct 380659 GGATCTTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATGGTCT 380718 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || ||||| || ||||||||||| Sbjct 380719 TGCCGGTCAGAGTCTTGACAAAGATTTGCAT 380749 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 || ||||| || || ||||||||| |||||||| || | ||||| || | || | Sbjct 381225 ACGAGGTGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCT-GC-CATCCT 381282 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || ||||| || |||||||| | | || || |||| || | ||| ||||| ||| Sbjct 381283 CGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGGGGAATACCCTCCTTATCCT 381342 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| | | | |||||||| | || || || || | || || |||| Sbjct 381343 GAATCTTGGTCTTAACATTATCGATGGTGTCAGAAGACTCTACTTCGAGAGTGATAGTCT 381402 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| ||||| |||||||||||||| Sbjct 381403 TACCAGTGAGAGTCTTGACGAAGATTTGCAT 381433 >seq90 Length=207308 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || ||||||||||||||||||||| | || || |||| || Sbjct 159081 ACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCCTCA 159140 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||||||||| || ||||||| || | || ||||| || Sbjct 159141 AGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGG 159200 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||||| || || ||||| | || || |||| Sbjct 159201 ATCTTGGTCTTGACATTGT--CGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCT 159258 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||||||| ||||| |||||||| Sbjct 159259 TACCGGTAAGGGTCTTGACGAAAATTTGCAT 159289 >seq111 Length=751517 Score = 102 bits (112), Expect = 6e-17 Identities = 160/225 (71%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || ||||||| | | || |||||||| || |||||||||||||||||| || Sbjct 299259 ATACCACCTCTCAAACGGAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCA 299200 Query 44168 GCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | || || || | || || || ||||| || || ||||| | ||| || ||||||| Sbjct 299199 GAAAG--GGTTCTGCCATCTTCGAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTG 299142 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGA 44283 || | |||||||| ||| ||||| ||| || ||| | |||||||||| || Sbjct 299141 GGGGAATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGT--CAATGGTGTCGGAAGA 299084 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328 || ||||| | || || ||||| || || |||||||| ||||| Sbjct 299083 CTCGACCTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAA 299039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989671694422