Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq111 150 4e-31 seq32 141 2e-28 seq90 132 1e-25 >seq111 Length=751517 Score = 150 bits (166), Expect = 4e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 |||||| || || || || || || || |||||||||||||| || || |||||||| Sbjct 299038 TTTCGTCAAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCAT 299097 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 || || ||||| ||||| |||||||| |||||||| || || || || ||||| || Sbjct 299098 TGACAATGTCAAGACCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAACAACGTCT 299157 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||| || || || ||||||||||| || || ||| | || || ||| ||||||| Sbjct 299158 TATCTTCGCTGGTAAGCAACTCGAAGATGGCAGAACCCTTTCTGACTACAACATCCAAAA 299217 Query 178109 AGAATCAACACTGCATCTTGT 178129 || || || || || ||||| Sbjct 299218 GGAGTCTACTCTTCACCTTGT 299238 >seq32 Length=396137 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || || ||||| || ||||| || || ||| Sbjct 381886 CAAATCTTCGTAAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTCGAGTCTTCTGAC 381827 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||| ||||| ||||| || ||||| ||||| || Sbjct 381826 ACCATCGACAACGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAACAG 381767 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || || || ||||| || | |||||| | ||||| ||| || Sbjct 381766 CGTTTGATTTTCGCTGGTAAGCAACTGGAAGACGGTCGTACTCTTTCTGATTACAACATC 381707 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||| || || || |||| Sbjct 381706 CAAAAAGAATCCACTCTCCA-CTTG 381683 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || |||||||| || || || ||||| ||||| || || || ||| Sbjct 381430 CAAATCTTCGTCAAGACTCTCACTGGTAAGACTATCACTCTCGAAGTAGAGTCTTCTGAC 381371 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||||||||| || || || || || || ||||| ||| Sbjct 381370 ACCATCGATAATGTTAAGACCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAACAA 381311 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||| || || || || ||||| ||||| || |||||| | || || ||| | Sbjct 381310 AGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGCAGAACTCTTTCTGACTACAACATT 381251 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || || || || Sbjct 381250 CAAAAGGAGTCTACTCTCCACCTCGT 381225 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || || || || |||||||||||||| || || ||| Sbjct 380746 CAAATCTTTGTCAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCTGAC 380687 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || ||||| || || || || || ||||| ||| Sbjct 380686 ACCATCGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAACAA 380627 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||| | ||||| || || || || | || || ||| || Sbjct 380626 CGTCTTATCTTCGCTGGTAAGCAGTTGGAAGACGGCAGAACCCTCTCTGACTACAACATC 380567 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 380566 CAGAAGGAGTCCACCCTCCA-CTTG 380543 Score = 127 bits (140), Expect = 5e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || |||||||| ||||| || || ||| Sbjct 380974 CAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAGTCTTCCGAC 380915 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| || ||||| || || || || || ||||| || Sbjct 380914 ACCATCGACAACGTTAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAACAG 380855 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || || || || |||||||| || ||| |||| || ||| || Sbjct 380854 CGTTTGATTTTCGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTTCCGACTACAACATC 380795 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||| || || || || || Sbjct 380794 CAAAAGGAGTCCACTCTCCA 380775 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || || ||||| ||||| || ||| || ||| Sbjct 381202 CAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAAGTTGAATCTTCCGAC 381143 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| || ||||| || || || || || ||||| || Sbjct 381142 ACCATCGATAATGTTAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAACAG 381083 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || || ||||| ||||| | |||||| | ||||| ||| || Sbjct 381082 CGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTTTCTGATTACAACATC 381023 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||| || || || |||| Sbjct 381022 CAAAAAGAATCCACTCTCCA-CTTG 380999 >seq90 Length=207308 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || || || |||||||||||||| || || ||| Sbjct 159286 CAAATTTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTCCGAC 159227 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| || ||||| || ||||| || || || || ||| Sbjct 159226 ACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAACAA 159167 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || || || || || | |||||| | ||||| ||| || Sbjct 159166 CGTTTGATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACTCTTTCTGATTACAACATC 159107 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || || ||||| Sbjct 159106 CAAAAGGAGTCTACTCTCCACCTTGT 159081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728639814204