Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torulaspora_20delbrueckii_20[genbank_20GCA_5F000243375.1_202011-12- 08] 8 sequences; 9,220,678 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 138 2e-27 seq6 129 1e-24 seq5 118 2e-21 >seq2 Length=1354397 Score = 138 bits (152), Expect = 2e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || ||||||||||| | || || || || |||| ||| | || || || || || Sbjct 395822 ATGATACCACCTCTCAATCTTAGAACCAAGTGTAGAGTGGATTCCTTTTGGATGTTGTAG 395763 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || |||| || |||| |||||||| ||||||||||| || ||||| ||||||||| Sbjct 395762 TCGGACAAAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCA 395703 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || ||||| || ||||| || || || ||||| ||||| || || ||| Sbjct 395702 GGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGAT 395643 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060 || ||||| | ||| ||||| |||||||| || || || | ||| Sbjct 395642 TCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACGAA 395599 >seq6 Length=1070623 Score = 129 bits (142), Expect = 1e-24 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || || || || ||||| | || || || || Sbjct 959809 TTCTTACCACCACCTCTCAATCTTAGGACCAAGTGCAAAGTGGATTCCTTTTGGATGTTG 959750 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || |||| || | || |||||||| ||||||||||| || ||||| |||||| Sbjct 959749 TAGTCAGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGG 959690 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || || || || ||||| || ||| || ||||| ||||| || || Sbjct 959689 TCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGACTTGACATTGTCAATAGTGTCAGAA 959630 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||| | ||||| || ||||| || || || || | ||| || ||||| || Sbjct 959629 GATTCGACTTCCAAGGTAATAGTCTTACCGGTCAAAGTCTTGACGAAAATTTGCATCTT 959571 >seq5 Length=1086982 Score = 118 bits (130), Expect = 2e-21 Identities = 359/544 (66%), Gaps = 13/544 (2%) Strand=Plus/Plus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 || ||||| ||||| ||| | ||||||||||| || || || || | | || || Sbjct 838781 TTCTGGTAGTCAGAGACTCTCTTTTCGAAAAAATTGGTCTTACCAGCCAGCGAGATGTTC 838840 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAA- 38950 | ||| ||||||||||| || | || || |||| | | | | | | | | Sbjct 838841 TCCATGAAATCAAATGGGTTAGTCACGTTGAAAAATTTCT-TGTTCCCGAAAGCGACCAG 838899 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 || |||||| || || || ||||| || || ||| | || |||||||||||||| Sbjct 838900 TAGTCTATCAGCGACGAACTCAACGTACTGGTTCATCAGGTCGGCGTTCATACCCAATAA 838959 Query 39011 TTTAAATGGTAATGCATC-ATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 || |||| ||||| || || | |||||| | || || || |||| |||| | Sbjct 838960 AGAAACGGGTAGAGCATCGATGAAGTACCTCTTTT-CGATCTCGACGGCTTCAGTAATAA 839018 Query 39070 tcataattatattattttttgataat--ttatatttaatatgattcgcatataGTAAACA 39127 || | || || || ||| |||| || | |||| ||| |||||| ||| Sbjct 839019 TCTT--TTCGATAATGGAAGGATCTGGCTTATTCTTCAAATGA---GCAAATAGTAGACA 839073 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 ||||||||| |||||||||||||| || || | || ||||| ||| ||| |||| || Sbjct 839074 TGCAAAATCGGTATGTAAACCTTCATCTCTGCAGATCAATTCGTTAGAAAACGTTAGACC 839133 Query 39188 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 39247 |||||||| ||| |||| || | ||| || || | ||||| || |||||||| || Sbjct 839134 TGGCATTAGACCTTTCTTCTTCAACCAGAAGATAGCAGCAAAGGAACCTGAAAAGAA-AT 839192 Query 39248 ACCCTCCACACAC-GCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAA 39306 | ||| || | || || || | | ||| || | || || ||| | || || Sbjct 839193 AACCTTCAATGGCAGCGAAAGCAACCAATCTCTCTGCGAAGATAGATTCACTGTCCTGAA 839252 Query 39307 TCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 39366 |||| | || ||||| || || || | ||| || ||| || ||||| || || || | Sbjct 839253 TCCATCTGATAGCCCATTCGGCCTTCTCTTTAATCTGAGGAATGTTTTCAATCGCATTGA 839312 Query 39367 ATAA 39370 |||| Sbjct 839313 ATAA 839316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135909486400