Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torulaspora_20delbrueckii_20[genbank_20GCA_5F001029055.1_202015-06- 17] 8 sequences; 11,524,969 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5 176 4e-39 seq1 89.7 5e-13 >seq5 Length=1457367 Score = 176 bits (194), Expect = 4e-39 Identities = 406/602 (67%), Gaps = 21/602 (3%) Strand=Plus/Minus Query 57534 CGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCA 57593 ||||||||||| | || || || |||| | || |||||| | ||| || | ||| Sbjct 1119690 CGTAGATTTGTTCTATTCCCAATCAAATACCATGAGATTTGGCAAGCGTATAAGAGAGCA 1119631 Query 57594 GAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGAT 57653 || || ||||| ||||| | |||||| | || || || |||||| | |||||| || Sbjct 1119630 GAGGCTTCGTTCTGGACGGCCGAAGAGATTGATCTATCGAAGGATATTCATGATTGGAAT 1119571 Query 57654 TCCCTCAAAGAATCTGAGAGAAATTTTATTAAACAC----GTGTTGGCGTTTTTCGCCGC 57709 || | |||| || |||| || || | | | || ||||| || || || || Sbjct 1119570 AACC-GTATGAATGAGAACGAAAGATTTTTCATCTCCCGTGTCTTGGCCTTCTTTGCTGC 1119512 Query 57710 ATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA--CAAGAAGTGCAAGTG 57767 || |||||||| || || |||||||| || | ||| ||||| |||||||||| | Sbjct 1119511 CTCTGATGGTATAGTAAATGAGAATTTAGTTG--AGAATTTCAGTGCAGAAGTGCAAATT 1119454 Query 57768 ACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATG 57827 | || || | ||| ||||| || || ||| | || |||||| | || ||||| | Sbjct 1119453 CCAGAAGCTAAATGTTTTTATGGTTTCCAAATCATGATGGAAAACATTCACTCAGAGACC 1119394 Query 57828 TATTCGCTACTCATCGATACGTACGTGAAGGA--CAACGACGAGAAACG-TAGACTGTTC 57884 ||||| || | || ||||| || | ||||| ||| | || || || | ||||| Sbjct 1119393 TATTCCCTGTTAATTGATACTTATATCAAGGATCCAA--AGGA-AAGCGATTTCTTGTTC 1119337 Query 57885 AACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATA 57944 || |||||||||| || || ||| ||||||| || ||| | |||| |||||| Sbjct 1119336 AATGCGATCGAAAACATTCCTCAGATTAAAGAGAAGGCCGAATGGGCTATCAGATGGATT 1119277 Query 57945 AAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGT 58001 | | || | | | ||||| ||||| | | || || || ||| | |||||| Sbjct 1119276 CA---GGACAGTGAATCTATCTTCGCAGAGAGATTGGTTGCTTTTGCTGCCATTGAAGGT 1119220 Query 58002 ATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCC 58061 || |||||||| || |||||| || || || ||| ||||||| || || ||||| Sbjct 1119219 ATTTTCTTTTCAGGTTCCTTTGCTGCTATCTTCTGGTTGAAGAAGAAAGGTCTAATGCCA 1119160 Query 58062 GGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCG 58121 || || |||||| ||||| ||||| | | || || ||| | ||||| |||||||| Sbjct 1119159 GGTCTAACGTTTTCTAACGAATTGATCTGCAGAGATGAAGGTTTACATACCGATTTTGCA 1119100 Query 58122 TG 58123 || Sbjct 1119099 TG 1119098 >seq1 Length=1865156 Score = 89.7 bits (98), Expect = 5e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||| || || ||||| || || || |||||||| || || | ||||| || | ||| | Sbjct 1271877 TTCGACCCGCCTCATGAACAGGTCAGGTATCCACAGCGCAAAAAACAGATCTCTGGCTCT 1271936 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || || ||||| ||| ||||||| | | | ||| || | | |||||||||||| Sbjct 1271937 CATTTCTTCTTTACCGTGGTTCTTTCGAAGCTGTAGAAAATCAAGGATGTCCGCATGCCA 1271996 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTA 23517 |||||||| || | | | | || || || ||||| ||||| |||||||| || || Sbjct 1271997 TGGCTCGAGATATATGCAATAAGCTCCGGGCCTCTTGTTGCCACCCTGATCTACATA 1272053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766355423360