Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torulaspora_20delbrueckii_20[genbank_20GCA_5F001029055.1_202015-06- 17] 8 sequences; 11,524,969 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 282 5e-71 seq8 188 9e-43 >seq5 Length=1457367 Score = 282 bits (312), Expect = 5e-71 Identities = 422/594 (71%), Gaps = 10/594 (2%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 |||||| |||||| || | ||| || ||||| | || ||||||||||||||||| || Sbjct 1119097 ACATGCAAAATCGGTATGTAAACCTTCATCTCTGCAGATCAATTCGTTAGAAAACGTTAG 1119156 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || |||||||| || ||| || | ||| || || | ||| || || || |||||||| Sbjct 1119157 ACCTGGCATTAGACCTTTCTTCTTCAACCAGAAGATAGCAGCAAAGGAACCTGAAAAGAA 1119216 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATG 33757 || ||||| | |||||||| |||| | ||||||| | | | | ||||| || Sbjct 1119217 AATACCTTCAATGGCAGCAAAAGCAACCAATCTCTCTGCGAAGATAGATTCACTGTCCTG 1119276 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | |||||| |||||||||| ||| | ||| || |||| || ||||| Sbjct 1119277 AATCCATCTGATAGCCCATTCGGCCTTCTCTTTAATCTGAGGAATGTTTTCGATCGCATT 1119336 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 || | | | |||| || ||| || | ||||||||| || || || ||| | Sbjct 1119337 GAACAAGAAATCGCTTTCCTTTGGATCCTTGATATAAGTATCAATTAACAGGGAATAGGT 1119396 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || || ||||||||||| || || || || || || |||||| |||| || | ||| Sbjct 1119397 CTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAAAAACATTTAGCTTCTGGAAT 1119456 Query 33938 CTGCACTTCTGTAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 |||||||||| || ||| || || ||||||| ||||| ||||| |||||| ||| Sbjct 1119457 TTGCACTTCTGCACTGAAATTC--TCAACTAAATTCTCATTTACTATACCATCAGAGGCA 1119514 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGT--GTTAGTTTATTC 34052 ||||| || ||||| ||| | || ||| || ||||| ||| | | | |||||| Sbjct 1119515 GCAAAGAAGGCCAAGACACGGGAGATGAAAAATCTTTCGTTCTCATTCATACGGTTATTC 1119574 Query 34053 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112 ||||||| ||||| || |||| ||| | ||||| | ||||| || || |||||||| Sbjct 1119575 CAATCATGAATATCCTTCGATAGATCAATCTCTTCGGCCGTCCAGAACGAAGCCTCTGCT 1119634 Query 34113 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTA 34166 | |||||| | ||| || ||||| |||| ||||||||| | |||||||||| Sbjct 1119635 CTCTTATACGCTTGCCAAATCTCATGGTATTTGATTGGGAATAGAACAAATCTA 1119688 >seq8 Length=940994 Score = 188 bits (208), Expect = 9e-43 Identities = 496/753 (66%), Gaps = 8/753 (1%) Strand=Plus/Plus Query 63516 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63575 ||| | | |||||| || ||| || ||| || || || || | ||||| || | Sbjct 325631 CCAGTAGAACGAATGTTGTGAATGTGTAAACCAATACCACCAGCGGTCTTAGAAATCATA 325690 Query 63576 GCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGA 63635 || ||| || || || || || || || || ||| ||||| ||||| | ||| Sbjct 325691 GCACATTCCTTCAAAGTATCGTAAATACCCTCGATGGAGTCATCCTTCATGGCGATTAGG 325750 Query 63636 AAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63695 ||||| |||||| || | || | ||| || ||||| || | || |||||||| || Sbjct 325751 AAACATGAAGACATCTGAGGGCGTGGAGTACCAGCATTGAAAAGAGTTGGAGAAGCATGA 325810 Query 63696 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA 63755 | || || | || | ||||| || ||||||||||| || || || || | Sbjct 325811 ATGAAGTATCTCAAGGACATCAGATTATAAGTCTCAATAGCAGACTCGATGTCGTCACCA 325870 Query 63756 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTT 63815 ||||| || || || || | ||| | ||| || ||||| | |||| | | || ||| Sbjct 325871 TGAATACCAACAGCAACTCTCATAATCATATGTTGAGGACGTTCAGCGACTTCACCATTT 325930 Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGT 63873 || ||| || || || |||| |||||| || |||||||||||| | ||||| | Sbjct 325931 ATCCTCAGCAGATAAGAACGCTCCAGAGTTTTGAACCCAAAATAGTTGAAGTTGAAA--T 325988 Query 63874 CTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGG 63933 ||| || || | |||| | || || |||| |||||||| |||||| || || ||||| Sbjct 325989 CTCTATCATACACAATAGCAGAGTTCAGCTCATCCTTATGTTTGTTGACAATGTCCAT-- 326046 Query 63934 TAATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAA 63991 | ||| || || || |||||||| ||| || || || || ||||||||||| || Sbjct 326047 AACCTCTTGCGAGATCATAGGAGAATGAACCCCGTTCTTTGGGTTCACATAGTTGAACAA 326106 Query 63992 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTAT 64051 || || || | | ||| |||| | || | |||||| | ||| || || ||||| Sbjct 326107 TTCACTCACAACCTGAGAAAACTGTTTAGTAGTCTGCTTGTGCAAATTAGAGATAGCTAT 326166 Query 64052 TCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGC 64111 ||| ||||| | | | |||||||| ||||| || || | || |||| || Sbjct 326167 TCTAGCGGCCAAAGTAGCATAATCAGGATGCACAGTCGTCATATACGCACAAGTTTCAGC 326226 Query 64112 TGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 |||| | |||||||||| || || || || || | ||| | || ||| | | Sbjct 326227 AGCCAAATTGTCCAATTCAACAGTAGTCACACCTTCATAGACACCAGAAATGATACGCTG 326286 Query 64172 AGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACG 64231 | || |||| || ||| ||||| | | || || |||||||| || | ||||| Sbjct 326287 GGTGATCTTAACAGCATCAATATGTGCAGGGTCTAGACCATAGCATAAACGTGATATACG 326346 Query 64232 AGACGTGATTTTATCAAACATGACATTTTCCTT 64264 | || || || || ||| | |||| |||||| Sbjct 326347 TGCAGTAATCTTGTCGAACCTAACATGTTCCTT 326379 Score = 113 bits (124), Expect = 6e-20 Identities = 352/539 (65%), Gaps = 7/539 (1%) Strand=Plus/Plus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 |||||| | ||||||||||| | ||| || |||| || || | || |||||||| || Sbjct 323424 CTTGTCAATGGTGAATTGAATAGCAGCAGAAGCGGCTTGTGTTCTCAGGTAGTACATACC 323483 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 || || | ||| |||| ||||| ||||||||||| || | ||| | | || Sbjct 323484 AGTCTTCAAACCCTTCTTCCAACCGTAGAAATGCATACTAGTCAATTTACCCATAGTTGG 323543 Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215 | | || || || |||| ||||| ||||||||| | | | | || || || Sbjct 323544 AGCACGGATGTGAATGTTCAATGATTGGGACTGATCGATGTAAACAGCACGATCAGCTGC 323603 Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT 62274 ||| | ||||| || ||||| | |||||||||| ||| || || || || ||| | | Sbjct 323604 CATCTCGATGATAGTTTTTTGAGAGATTTCCCAAACAGTCTTGTACAAATC-CTTTAGTT 323662 Query 62275 CTTCTGGAAGGTT---TGTATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGA 62331 ||| |||| || | ||| || ||||| ||| ||| || || | ||| | Sbjct 323663 CTTGAGGAATATTCGGTAGATTTTGGATGGAGCCATTATCAGTGATGATGTGTTGCTTCA 323722 Query 62332 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTT 62391 | ||||| ||| | | ||| ||| | | || | | ||||| || | || Sbjct 323723 TACTATCATCCCAGATACCTAGGTCGACCAAATCACGTAGCAAGTAAGGGTTGACAATTT 323782 Query 62392 GGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62451 ||||||| || || || || | |||| ||| ||||| || || || || | ||| Sbjct 323783 GGAATTCACCGGATAACACACGACGAGAGTACATATTGGAAGTGTATGGCTCGAAACACT 323842 Query 62452 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62511 | || | || | ||| || | ||| || ||||| ||||| || |||| | ||| | Sbjct 323843 CGTTGTAACCTAGAATCTGGGAAGTCGACGCAGTTGGCATTGGGGCCAATAGCAAAGAGT 323902 Query 62512 TTCTAAGACCGTATGTTCTGAT-TTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGA 62569 |||||| ||| ||| |||| || |||| | || ||||||| ||| |||||||| Sbjct 323903 TTCTAACACCATATTCCTTGATGCTTTTCTTCAAAGTG-TCCCAATCCCATAGATCCGA 323960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817537018240