Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torulaspora_20delbrueckii_20[genbank_20GCA_5F001029055.1_202015-06- 17] 8 sequences; 11,524,969 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 268 1e-66 seq8 120 3e-22 seq1 84.2 2e-11 >seq5 Length=1457367 Score = 268 bits (296), Expect = 1e-66 Identities = 430/611 (70%), Gaps = 19/611 (3%) Strand=Plus/Plus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 |||||||||||| ||||| || || ||||| | |||||||| |||||||| |||| Sbjct 1119097 ACATGCAAAATCGGTATGTAAACCTTCATCTCTGCAGATCAATTCGTTAGAAAACGTTAG 1119156 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 ||| ||||| || ||| | || || |||||||| |||| |||||| || || |||||||| Sbjct 1119157 ACCTGGCATTAGACCTTTCTTCTTCAACCAGAAGATAGCAGCAAAGGAACCTGAAAAGAA 1119216 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 |||||||| | || ||||||||||| | ||| ||| | | ||| ||| | | || Sbjct 1119217 AATACCTTCAATGGCAGCAAAAGCAACCAATCTCTCTGCGAAGATAGATTCACTGTCCTG 1119276 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 ||||||| | | ||||| || ||||||| ||| | || || | || || | ||| Sbjct 1119277 AATCCATCTGATAGCCCATTCGGCCTTCTCTTTAATCTGAGGAATGTTTTCGATCGCATT 1119336 Query 19200 AAATAGATACATACGC--TCATCTGTATCTTTAACATATGCATCTATCAATAAACTG--- 19254 || | | | || ||| || | || ||| || | ||| | ||||||| ||| | Sbjct 1119337 GAACA-AGAAAT-CGCTTTCCTTTGGATCCTTGATATAAG----TATCAATTAACAGGGA 1119390 Query 19255 -TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 || | ||||| ||||| ||||| || || || || || ||||||||| | ||||| Sbjct 1119391 ATAGGTCTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAAAAACATTTAGCTTC 1119450 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 || || || ||||| || || | || || ||||| ||||| ||||| |||||| Sbjct 1119451 TGGAATTTGCACTTCTGCACTGAAATTCTCAACTAAATTCTCATTTACTATACCATCAGA 1119510 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTC-ATCTGAGGTTAAT---- 19428 || ||||| || || || ||| | || ||| | |||| ||| | || || Sbjct 1119511 GGCAGCAAAGAAGGCCAAGACACGGGAGATGAAAAATCTTTCGTTCTCA--TTCATACGG 1119568 Query 19429 GTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCC 19488 |||||||||||| |||||| || |||| ||| | ||||| | ||||| || |||||| Sbjct 1119569 TTATTCCAATCATGAATATCCTTCGATAGATCAATCTCTTCGGCCGTCCAGAACGAAGCC 1119628 Query 19489 TCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTA 19548 |||||| | |||||| | ||| || ||| | |||| || || |||| |||||||||| Sbjct 1119629 TCTGCTCTCTTATACGCTTGCCAAATCTCATGGTATTTGATTGGGAATAGAACAAATCTA 1119688 Query 19549 TTTTTATTTTC 19559 ||| || || Sbjct 1119689 CGTTTGTTCTC 1119699 >seq8 Length=940994 Score = 120 bits (132), Expect = 3e-22 Identities = 324/495 (65%), Gaps = 4/495 (1%) Strand=Plus/Plus Query 47956 ATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCA 48015 |||| ||||||||||| || | || || | ||||||| || || |||||||||| Sbjct 324597 ATTTAATAGTACCCAAGTTCTTTTGGTTGCTCTTTATGTTACAGGCATCTTTGTAAAGCA 324656 Query 48016 TAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCT--AGC 48073 | || || || ||||| ||| | |||||||| | ||||| | ||| |||| | ||| Sbjct 324657 TGAATGGGGTACCAGTCTCTGTTTGAGATTCCAAGATAGCGTACCA--CAGTTTTTGAGC 324714 Query 48074 CTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTC 48133 || ||| |||| | | ||| |||| |||||| |||||||| Sbjct 324715 TTTGATAGTCTTTCTACCACGACCTTCAGCGACGTAACGTTCATATAAGGCTTCAAATTC 324774 Query 48134 ATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTC 48193 ||| ||||| |||| | || || ||| |||| | ||| | | ||| | ||| || | Sbjct 324775 ATCACCATAAACATCAGACAAACCTGGAGCTTCACTTGGAGAGAACAAAGTCCATTCACC 324834 Query 48194 ATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCT 48253 || | || || | |||| || | |||||| ||||| || ||| || ||||| || Sbjct 324835 ATTCTCTTGAACACGTTTCATGAACAAATCTGGAATCCAGAGGGCTGGGAACAAATCTCT 324894 Query 48254 AGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGC 48313 | | | ||||| || || ||| | | || | || || | || || || Sbjct 324895 TGCACGAATCTCTTCCTTACCGTGGTTCTTCCGGATATCTATGAAATCAAAGATGTCTGC 324954 Query 48314 ATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTAT 48373 ||||||||||| || || | || | ||||||| | ||| ||||| |||||||| | Sbjct 324955 GTGCCATGGTTCCAAGTACAAAGCGAAAGCACCTGGCCTTTTGTTACCACCTTGATCCAC 325014 Query 48374 ATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATT 48433 ||| | ||||| ||||| | || | || ||| |||| | || || || |||| || Sbjct 325015 ATAACGAGCAGTGTTGTTGAAGACACGTACCATGGGGATCAACCCGTTCGAAGTACCGTT 325074 Query 48434 GGTTCCCGAAATATA 48448 || || | |||||| Sbjct 325075 AGTACCTGCAATATA 325089 Score = 114 bits (126), Expect = 1e-20 Identities = 393/604 (65%), Gaps = 33/604 (5%) Strand=Plus/Plus Query 48482 ACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCC 48541 ||| |||||||| || | ||||| || | |||||| || | ||||| ||||| || Sbjct 325660 ACCAATACCACCAGCGGTCTTAGAAATCATAGCACATTCCTTCAAAGTATCGTAAATACC 325719 Query 48542 TTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGT 48601 || || ||||| |||| | ||| ||||| |||||| || || | ||| Sbjct 325720 CTCGATGGAGTCATCCTTCATGGCGATTAGGAAACATGAAGACATCTGAGGGCGTGGAGT 325779 Query 48602 TCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATA 48661 || | ||| || | |||||||| |||||||| || || || || | || ||||| Sbjct 325780 ACCAGCATTGAAAAGAGTTGGAGAAGCATGAATGAAGTATCTCAAGGACATCAGATTATA 325839 Query 48662 TGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACAT 48721 || |||||| |||| || || || ||| ||||| | || || | ||| | ||| Sbjct 325840 AGTCTCAATAGCAGACTCGATGTCGTCACCATGAATACCAACAGCAACTCTCATAATCAT 325899 Query 48722 ATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGT 48781 || |||||| | |||| | | || |||||| ||| ||||| || |||| || Sbjct 325900 ATGTTGAGGACGTTCAGCGACTTCACCATTTATCCTCAGCAGATAAGAACGCTCCAGAGT 325959 Query 48782 TTTAAAACCAAAATAGTTGTA--TGAAAAGTCGTTATCATTAATAATTGATGAATTTATT 48839 ||| || |||||||||||| | ||||| || |||||| | ||| | || || | Sbjct 325960 TTTGAACCCAAAATAGTTGAAGTTGAAA--TCTCTATCATACACAATAGCAGAGTTCAGC 326017 Query 48840 CTTTCCTTATGTTTATATACTACATCCATTACATTTTTTGATATAAT-------TGA--- 48889 ||||||||||| | || | ||||| || | || || || || ||| Sbjct 326018 TCATCCTTATGTTTGTTGACAATGTCCATAACCTCTTGCGAGATCATAGGAGAATGAACC 326077 Query 48890 ---TTCCTT--GTAAAGAT-CTTCTACAA--CA-TCACTA------AATAtttttt--tt 48932 ||| || || | || || |||| || |||| | || | | ||| | Sbjct 326078 CCGTTCTTTGGGTTCACATAGTTGAACAATTCACTCACAACCTGAGAAAACTGTTTAGTA 326137 Query 48933 GTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGA 48992 || | || || | |||||| |||| ||||||||| || || |||||||||| ||||| Sbjct 326138 GTCTGCTTGTGCAAATTAGAGATAGCTATTCTAGCGGCCAAAGTAGCATAATCAGGATGC 326197 Query 48993 ATTGTTGTACATGTAC-TAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTAC 49051 | || || ||| ||| | | |||| || || || | || ||||| |||||| || Sbjct 326198 ACAGTCGT-CATATACGCACAAGTTTCAGCAGCCAAATTGTCCAATTCAACAGTAGTCAC 326256 Query 49052 ACCT 49055 |||| Sbjct 326257 ACCT 326260 >seq1 Length=1865156 Score = 84.2 bits (92), Expect = 2e-11 Identities = 182/270 (67%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 |||||| | |||||||| | || ||||||| || ||||| |||| |||| Sbjct 1271793 ATATAAGTCATCAAATTCTTTGCCGTACACATCGCATAGTCCAGGGGCCTCATCTGGACT 1271852 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 | ||| ||||||| ||| || || | |||| || | || |||||||| || Sbjct 1271853 AAACAAACACCAATCGCCATTGGATTCGACCCGCCTCATGAACAGGTCAGGTATCCACAG 1271912 Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 || | ||| | ||| || | ||| | |||||| || || ||| || ||| | || Sbjct 1271913 CGCAAAAAACAGATCTCTGGCTCTCATTTCTTCTTTACCGTGGTTCTTTCGAAGCTGTAG 1271972 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTA-CACCTGGTCGTT 48354 ||| || | || || ||||||||||| || | ||||| ||| || | | || || | | Sbjct 1271973 AAAATCAAGGATGTCCGCATGCCATGGCTCGAGATATA-TGCAATAAGCTCCGGGCCTCT 1272031 Query 48355 TATTACCTCCTTGATCTATATATCTGGCAG 48384 | || || || ||||||| |||||| |||| Sbjct 1272032 TGTTGCCACCCTGATCTACATATCTTGCAG 1272061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108743789120